RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 LYPD5Q6UWN5 251 aa12.3□□□□□ -0.44
TPM3-220ENST00000509601 NAGKQ9UJ70 344 aa12.3□□□□□ -0.44
TPM3-220ENST00000509601 ICOSQ9Y6W8 199 aa12.3□□□□□ -0.44
TPM3-220ENST00000509601 IGLV2-11P01706 119 aa12.29□□□□□ -0.44
TPM3-220ENST00000509601 TYMSP04818 313 aa12.29□□□□□ -0.44
TPM3-220ENST00000509601 ZNF80P51504 273 aaPredicted RBP12.29□□□□□ -0.44
TPM3-220ENST00000509601 SUMO1P63165 101 aaKnown RBP12.29□□□□□ -0.44
TPM3-220ENST00000509601 C5orf17Q8NAS9 161 aa12.29□□□□□ -0.44
TPM3-220ENST00000509601 INO80EQ8NBZ0 244 aaPredicted RBP12.29□□□□□ -0.44
TPM3-220ENST00000509601 ACTR3CQ9C0K3 210 aaPredicted RBP12.29□□□□□ -0.44
TPM3-220ENST00000509601 C11orf21Q9P2W6 132 aa12.29□□□□□ -0.44
TPM3-220ENST00000509601 TRGV4A0A0C4DH28 118 aa12.28□□□□□ -0.44
TPM3-220ENST00000509601 CXorf1O96002 111 aa12.28□□□□□ -0.44
TPM3-220ENST00000509601 ZNF726P1Q15940 193 aa12.28□□□□□ -0.44
TPM3-220ENST00000509601 MRPL23Q16540 153 aaKnown RBP12.28□□□□□ -0.44
TPM3-220ENST00000509601 EPDR1Q9UM22 224 aa12.28□□□□□ -0.44
TPM3-220ENST00000509601 PSG8Q9UQ74 426 aa12.28□□□□□ -0.44
TPM3-220ENST00000509601 FXYD6-FXYD2A0A087WZ82 144 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 SERTM2A0A1B0GWG4 89 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 GGTLC3B5MD39 225 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 M0R2P5 195 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 SIVA1O15304 175 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 OR2T35Q8NGX2 323 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 TMEM167BQ9NRX6 74 aa12.27□□□□□ -0.45
TPM3-220ENST00000509601 TRAV4A0A0B4J268 109 aa12.26□□□□□ -0.45
TPM3-220ENST00000509601 K7EQD1 137 aa12.26□□□□□ -0.45
TPM3-220ENST00000509601 BTF3P20290 206 aaKnown RBP12.26□□□□□ -0.45
TPM3-220ENST00000509601 KCNS1Q96KK3 526 aa12.26□□□□□ -0.45
TPM3-220ENST00000509601 NXPH4O95158 308 aa12.25□□□□□ -0.45
TPM3-220ENST00000509601 NEGR1Q7Z3B1 354 aa12.25□□□□□ -0.45
TPM3-220ENST00000509601 SDF2L1Q9HCN8 221 aa12.25□□□□□ -0.45
TPM3-220ENST00000509601 CYTL1Q9NRR1 136 aa12.25□□□□□ -0.45
TPM3-220ENST00000509601 BORCS7-ASMTA0A0B4J1R7 106 aa12.24□□□□□ -0.45
TPM3-220ENST00000509601 A0A1W2PRE2 83 aa12.24□□□□□ -0.45
TPM3-220ENST00000509601 FLI1Q01543 452 aaPredicted RBP12.24□□□□□ -0.45
TPM3-220ENST00000509601 RGS21Q2M5E4 152 aa12.24□□□□□ -0.45
TPM3-220ENST00000509601 OR4C5Q8NGB2 326 aa12.24□□□□□ -0.45
TPM3-220ENST00000509601 LINC00479Q96M42 142 aa12.24□□□□□ -0.45
TPM3-220ENST00000509601 NDFIP1Q9BT67 221 aa12.24□□□□□ -0.45
TPM3-220ENST00000509601 C16orf90A8MZG2 172 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 K7EQM0 130 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 TAAR5O14804 337 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 GCGP01275 180 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 GYPEP15421 78 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 LINC00315P59091 139 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 Q6ZRN7 208 aaPredicted RBP12.23□□□□□ -0.45
TPM3-220ENST00000509601 PRNTQ86SH4 94 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 CYB561D1Q8N8Q1 229 aa12.23□□□□□ -0.45
TPM3-220ENST00000509601 CTXND1A0A1B0GTU2 59 aa12.22□□□□□ -0.45
TPM3-220ENST00000509601 DPPA3Q6W0C5 159 aa12.22□□□□□ -0.45
TPM3-220ENST00000509601 TMEM75Q8N9X5 138 aa12.22□□□□□ -0.45
TPM3-220ENST00000509601 TNFRSF18Q9Y5U5 241 aa12.22□□□□□ -0.45
TPM3-220ENST00000509601 TRAV34A0A0B4J273 112 aa12.21□□□□□ -0.45
TPM3-220ENST00000509601 ORM1P02763 201 aa12.21□□□□□ -0.45
TPM3-220ENST00000509601 PFN1P07737 140 aaKnown RBP12.21□□□□□ -0.45
TPM3-220ENST00000509601 GATA1P15976 413 aaPredicted RBP12.21□□□□□ -0.45
TPM3-220ENST00000509601 SRIP30626 198 aa12.21□□□□□ -0.45
TPM3-220ENST00000509601 SMUG1Q53HV7 270 aa12.21□□□□□ -0.45
TPM3-220ENST00000509601 SPATA12Q7Z6I5 190 aa12.21□□□□□ -0.45
TPM3-220ENST00000509601 LOC100131303A0A0U1RQF7 123 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 FBLL1A6NHQ2 334 aaKnown RBP12.2□□□□□ -0.46
TPM3-220ENST00000509601 C9JCJ5 164 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 RS1O15537 224 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 FGF8P55075 233 aaPredicted RBP12.2□□□□□ -0.46
TPM3-220ENST00000509601 KRTAP10-2P60368 255 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 ZNF876PQ49A33 203 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 SAPCD1Q5SSQ6 148 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 C9orf85Q96MD7 179 aa12.2□□□□□ -0.46
TPM3-220ENST00000509601 FAM74A7A6NL05 159 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 SMLR1H3BR10 107 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 ARPC5O15511 151 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 RNASE3P12724 160 aaKnown RBP12.19□□□□□ -0.46
TPM3-220ENST00000509601 UBE2G2P60604 165 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 CFAP126Q5VTH2 177 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 PTH2Q96A98 100 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 KRTAP4-5Q9BYR2 181 aa12.19□□□□□ -0.46
TPM3-220ENST00000509601 IGKV3D-20A0A0C4DH25 116 aa12.18□□□□□ -0.46
TPM3-220ENST00000509601 PGPEP1LA6NFU8 196 aa12.18□□□□□ -0.46
TPM3-220ENST00000509601 AKR1C8PQ5T2L2 129 aa12.18□□□□□ -0.46
TPM3-220ENST00000509601 WFDC10BQ8IUB3 73 aa12.18□□□□□ -0.46
TPM3-220ENST00000509601 PCNPQ8WW12 178 aaKnown RBP12.18□□□□□ -0.46
TPM3-220ENST00000509601 IFNA7P01567 189 aa12.17□□□□□ -0.46
TPM3-220ENST00000509601 CRIP1P50238 77 aa12.17□□□□□ -0.46
TPM3-220ENST00000509601 SLC25A29Q8N8R3 303 aa12.17□□□□□ -0.46
TPM3-220ENST00000509601 TXNDC17Q9BRA2 123 aa12.17□□□□□ -0.46
TPM3-220ENST00000509601 ARL2-SNX15V9GYD0 113 aa12.17□□□□□ -0.46
TPM3-220ENST00000509601 PEX7O00628 323 aa12.16□□□□□ -0.46
TPM3-220ENST00000509601 CDK2AP2O75956 126 aa12.16□□□□□ -0.46
TPM3-220ENST00000509601 ZFP69Q49AA0 526 aa12.16□□□□□ -0.46
TPM3-220ENST00000509601 NKX6-2Q9C056 277 aaPredicted RBP12.16□□□□□ -0.46
TPM3-220ENST00000509601 LY96Q9Y6Y9 160 aa12.16□□□□□ -0.46
TPM3-220ENST00000509601 FABP5P3A8MUU1 101 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 CIDEAO60543 219 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 DNAH10OSP0CZ25 163 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 TIRAPP58753 221 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 ZNF506Q5JVG8 444 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 OR11H4Q8NGC9 324 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 HIST1H2BAQ96A08 127 aa12.15□□□□□ -0.46
TPM3-220ENST00000509601 DNAH8Q96JB1 4490 aa12.15□□□□□ -0.47
TPM3-220ENST00000509601 TRAV9-2A0A087WT02 112 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms