RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 ZNF705DP0CH99 300 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-212ENST00000508284 ZNF705BP0CI00 300 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-212ENST00000508284 FXYD7P58549 80 aa12.96□□□□□ -0.33
SQSTM1-212ENST00000508284 FAM19A4Q96LR4 140 aa12.96□□□□□ -0.33
SQSTM1-212ENST00000508284 IGHV3OR16-12A0A075B7B8 117 aa12.95□□□□□ -0.34
SQSTM1-212ENST00000508284 CRISP2P16562 243 aa12.95□□□□□ -0.34
SQSTM1-212ENST00000508284 SMUG1Q53HV7 270 aa12.95□□□□□ -0.34
SQSTM1-212ENST00000508284 ZC2HC1AQ96GY0 325 aa12.95□□□□□ -0.34
SQSTM1-212ENST00000508284 SFRP2Q96HF1 295 aa12.95□□□□□ -0.34
SQSTM1-212ENST00000508284 CLUHP3Q96NS8 147 aa12.95□□□□□ -0.34
SQSTM1-212ENST00000508284 A0A087WWC5 75 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 C7orf77A4D0Y5 90 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 MT-ND4LP03901 98 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 FAM231DQ6ZW35 169 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 C8orf49Q96NF6 230 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 OSTCQ9NRP0 149 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 APLNQ9ULZ1 77 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 CELA1Q9UNI1 258 aa12.94□□□□□ -0.34
SQSTM1-212ENST00000508284 PPP1R2P9O14990 202 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 LEPP41159 167 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 OR5I1Q13606 314 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 RNF212Q495C1 297 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 PRR27Q6MZM9 219 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 ZFAND2AQ8N6M9 145 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 C15orf54Q8N8G6 183 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 ANAPC16Q96DE5 110 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 CTDSP1Q9GZU7 261 aa12.93□□□□□ -0.34
SQSTM1-212ENST00000508284 KLLNB2CW77 178 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 TSPOP30536 169 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 EMP1P54849 157 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 ERVFC1-1P60608 527 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 IBA57Q5T440 356 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 FAM162BQ5T6X4 162 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 ATRAIDQ6UW56 229 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 AMTNQ6UX39 209 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 ZNF705AQ6ZN79 300 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 NEU1Q99519 415 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 RPS10P5Q9NQ39 176 aa12.92□□□□□ -0.34
SQSTM1-212ENST00000508284 IGHV4-4A0A075B6R2 117 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 DEFB131BA0A096LNP1 70 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 TMEM189A5PLL7 270 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 C19orf71A6NCJ1 209 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 SMIM9A6NGZ8 99 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 C12orf74Q32Q52 190 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 OR10G8Q8NGN5 311 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 TMEM242Q9NWH2 141 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 GOLT1BQ9Y3E0 138 aa12.91□□□□□ -0.34
SQSTM1-212ENST00000508284 VPS13DQ5THJ4 4388 aa12.9□□□□□ -0.34
SQSTM1-212ENST00000508284 H7BYZ3 331 aa12.9□□□□□ -0.34
SQSTM1-212ENST00000508284 PFN1P07737 140 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-212ENST00000508284 SPART-AS1P0CW21 52 aa12.9□□□□□ -0.34
SQSTM1-212ENST00000508284 DAZAP1Q96EP5 407 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-212ENST00000508284 RNASE7Q9H1E1 156 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-212ENST00000508284 SH2D1AO60880 128 aa12.89□□□□□ -0.35
SQSTM1-212ENST00000508284 P01737 135 aa12.89□□□□□ -0.35
SQSTM1-212ENST00000508284 CDKN1BP46527 198 aa12.89□□□□□ -0.35
SQSTM1-212ENST00000508284 CT83Q5H943 113 aa12.89□□□□□ -0.35
SQSTM1-212ENST00000508284 AMBPP02760 352 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 GPX1P07203 203 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 CRIP1P50238 77 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 ZNF80P51504 273 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 PRR9Q5T870 116 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 Q6AWC8 147 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 NUDT10Q8NFP7 164 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 NUDT11Q96G61 164 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 RPP21Q9H633 154 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 V9GYV3 84 aa12.88□□□□□ -0.35
SQSTM1-212ENST00000508284 FRAS1Q86XX4 4008 aa12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 DNAH10Q8IVF4 4471 aa12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 TRAV21A0A0B4J279 112 aa12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 C7orf71A4D174 169 aa12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 FABP5P3A8MUU1 101 aa12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 ZNF705GA8MUZ8 300 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 GATCO43716 136 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 TMEM208Q9BTX3 173 aa12.87□□□□□ -0.35
SQSTM1-212ENST00000508284 TEX48A0A1B0GUV7 120 aa12.86□□□□□ -0.35
SQSTM1-212ENST00000508284 BTN1A1Q13410 526 aa12.86□□□□□ -0.35
SQSTM1-212ENST00000508284 SPINK13Q1W4C9 94 aa12.86□□□□□ -0.35
SQSTM1-212ENST00000508284 NDUFAF3Q9BU61 184 aa12.86□□□□□ -0.35
SQSTM1-212ENST00000508284 J3KRW8 73 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 M0R2Z0 102 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 RRN3P1Q2M238 152 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 LINC01559Q495D7 138 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 GFI1BQ5VTD9 330 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 C1orf158Q8N1D5 194 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 IMMP2LQ96T52 175 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 SMCO4Q9NRQ5 59 aa12.85□□□□□ -0.35
SQSTM1-212ENST00000508284 RNASE4P34096 147 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-212ENST00000508284 RPS20P60866 119 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-212ENST00000508284 FAM222AQ5U5X8 452 aa12.84□□□□□ -0.35
SQSTM1-212ENST00000508284 OR2D3Q8NGH3 330 aa12.84□□□□□ -0.35
SQSTM1-212ENST00000508284 C20orf144Q9BQM9 153 aa12.84□□□□□ -0.35
SQSTM1-212ENST00000508284 DKK2Q9UBU2 259 aa12.84□□□□□ -0.35
SQSTM1-212ENST00000508284 XKRY2A2RUG3 117 aa12.83□□□□□ -0.36
SQSTM1-212ENST00000508284 A8MWL6 223 aa12.83□□□□□ -0.36
SQSTM1-212ENST00000508284 SCO1O75880 301 aa12.83□□□□□ -0.36
SQSTM1-212ENST00000508284 INSP01308 110 aa12.83□□□□□ -0.36
SQSTM1-212ENST00000508284 CXCL1P09341 107 aa12.83□□□□□ -0.36
SQSTM1-212ENST00000508284 KIR3DS1Q14943 382 aa12.83□□□□□ -0.36
SQSTM1-212ENST00000508284 CBLN2Q8IUK8 224 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms