RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 CEP250Q9BV73 2442 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 IGHV3OR16-8A0A075B7F1 116 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 LINC01548A6NM66 108 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 SCGB2A1O75556 95 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 LYRM7Q5U5X0 104 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 SPANXN1Q5VSR9 72 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 IGFL3Q6UXB1 125 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 FAM57AQ8TBR7 257 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 BAALCQ8WXS3 180 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 KLK15Q9H2R5 256 aa13.1□□□□□ -0.31
SQSTM1-211ENST00000506690 SFTA2Q6UW10 78 aa13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 DPM3Q9P2X0 92 aa13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 GATA3P23771 443 aa13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 SRSF9Q13242 221 aaKnown RBP eCLIP13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 SCGB1D4Q6XE38 83 aa13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 RASL10AQ92737 203 aa13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 ONECUT1Q9UBC0 465 aa13.09□□□□□ -0.31
SQSTM1-211ENST00000506690 A0A0G2JNJ9 132 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 E7EQL1 145 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 BUB3O43684 328 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 NDUFA11Q86Y39 141 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 VKORC1Q9BQB6 163 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 Q9UFV3 132 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 PRSS29PA6NIE9 313 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 TCL1BO95988 128 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 SUMO2P61956 95 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 MSRB2Q9Y3D2 182 aa13.08□□□□□ -0.32
SQSTM1-211ENST00000506690 TRBV20-1A0A075B6N2 111 aa13.07□□□□□ -0.32
SQSTM1-211ENST00000506690 CSMD1Q96PZ7 3565 aa13.07□□□□□ -0.32
SQSTM1-211ENST00000506690 ADGRG4Q8IZF6 3080 aa13.07□□□□□ -0.32
SQSTM1-211ENST00000506690 IGHV3-35A0A0C4DH35 117 aa13.07□□□□□ -0.32
SQSTM1-211ENST00000506690 ZNF688P0C7X2 276 aa13.07□□□□□ -0.32
SQSTM1-211ENST00000506690 Q6ZQT7 251 aa13.07□□□□□ -0.32
SQSTM1-211ENST00000506690 LYNX1G3V0Z9 82 aa13.06□□□□□ -0.32
SQSTM1-211ENST00000506690 LYNX1P0DP58 116 aa13.06□□□□□ -0.32
SQSTM1-211ENST00000506690 HES1Q14469 280 aa13.06□□□□□ -0.32
SQSTM1-211ENST00000506690 ZFAND3Q9H8U3 227 aa13.06□□□□□ -0.32
SQSTM1-211ENST00000506690 AKAP13Q12802 2813 aa13.06□□□□□ -0.32
SQSTM1-211ENST00000506690 C2orf66Q6UXQ4 117 aa13.05□□□□□ -0.32
SQSTM1-211ENST00000506690 A8MWV9 139 aa13.05□□□□□ -0.32
SQSTM1-211ENST00000506690 FOXC1Q12948 553 aa13.05□□□□□ -0.32
SQSTM1-211ENST00000506690 LY6G5BQ8NDX9 201 aa13.05□□□□□ -0.32
SQSTM1-211ENST00000506690 TRAV8-2A0A0B4J237 113 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 CENPVL3A0A0U1RRI6 287 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 H3BVH4 76 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 KLHL30-AS1Q8NEE0 82 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 ANAPC13Q9BS18 74 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 TPRP12270 2363 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 A0A0J9YY99 117 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 RNF223E7ERA6 249 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 C9orf47Q6ZRZ4 202 aa13.04□□□□□ -0.32
SQSTM1-211ENST00000506690 MRPL53Q96EL3 112 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-211ENST00000506690 HIF1ANQ9NWT6 349 aa13.03□□□□□ -0.32
SQSTM1-211ENST00000506690 MGAQ8IWI9 3026 aa13.03□□□□□ -0.32
SQSTM1-211ENST00000506690 TMEM262E9PQX1 116 aa13.03□□□□□ -0.32
SQSTM1-211ENST00000506690 ZFAND6Q6FIF0 208 aa13.03□□□□□ -0.32
SQSTM1-211ENST00000506690 ANKRD29Q8N6D5 301 aa13.03□□□□□ -0.32
SQSTM1-211ENST00000506690 CLPSL1A2RUU4 121 aa13.02□□□□□ -0.32
SQSTM1-211ENST00000506690 CRYGDP07320 174 aa13.02□□□□□ -0.32
SQSTM1-211ENST00000506690 RPL39LQ96EH5 51 aaKnown RBP13.02□□□□□ -0.32
SQSTM1-211ENST00000506690 CITED1Q99966 193 aa13.02□□□□□ -0.32
SQSTM1-211ENST00000506690 SPTBN2O15020 2390 aa13.02□□□□□ -0.33
SQSTM1-211ENST00000506690 CFC1BP0CG36 223 aa13.02□□□□□ -0.33
SQSTM1-211ENST00000506690 CFC1P0CG37 223 aa13.02□□□□□ -0.33
SQSTM1-211ENST00000506690 KIR2DL4Q99706 377 aa13.02□□□□□ -0.33
SQSTM1-211ENST00000506690 ODF3BA8MYP8 253 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 GAGE5Q13069 117 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 GAGE6Q13070 117 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 C10orf126Q8N4M7 172 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 IGHV3-66A0A0C4DH42 116 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 B9A039 149 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 IGHV3-30P01768 117 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 IGHV3-30-5P0DP03 117 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 TEX29Q8N6K0 151 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 Q8N6K4 173 aa13.01□□□□□ -0.33
SQSTM1-211ENST00000506690 IGLV4-69A0A075B6H9 119 aa13□□□□□ -0.33
SQSTM1-211ENST00000506690 PRR9Q5T870 116 aa13□□□□□ -0.33
SQSTM1-211ENST00000506690 C11orf86A6NJI1 115 aa13□□□□□ -0.33
SQSTM1-211ENST00000506690 SRD5A1P18405 259 aa13□□□□□ -0.33
SQSTM1-211ENST00000506690 DPH3P1Q9H4G8 78 aa13□□□□□ -0.33
SQSTM1-211ENST00000506690 SS18L2Q9UHA2 77 aa13□□□□□ -0.33
SQSTM1-211ENST00000506690 M0QXV9 152 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 M0R381 172 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 WNK2Q9Y3S1 2297 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 IGHV7-81A0A0B4J1V7 117 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 NHLRC4P0CG21 123 aaPredicted RBP12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 C15orf32Q32M92 178 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 Q6ZS46 218 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 SLC25A29Q8N8R3 303 aa12.99□□□□□ -0.33
SQSTM1-211ENST00000506690 PCNX1Q96RV3 2341 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 CLEC3BP05452 202 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 ARHGAP32A7KAX9 2087 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 TSHBP01222 138 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 HERVK_113P61574 105 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 PAPPA-AS1Q5QFB9 102 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 C14orf178Q8N769 122 aaPredicted RBP12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 AJUBAQ96IF1 538 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 PRO1854Q9UHT4 67 aa12.98□□□□□ -0.33
SQSTM1-211ENST00000506690 IGHV3OR16-13A0A075B7E8 117 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms