RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755		G3V3Q6	166 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755		M0R2P5	195 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	CXorf1	O96002	111 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	IGLV2-11	P01706	119 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	SFTA3	P0C7M3	94 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	MRPL23	Q16540	153 aa	Known RBP	4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	RPL7L1	Q6DKI1	246 aa	Known RBP	4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	C5orf17	Q8NAS9	161 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	INO80E	Q8NBZ0	244 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	ZNF479	Q96JC4	524 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	SGK494	Q96LW2	274 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	ACTR3C	Q9C0K3	210 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	TMEM167B	Q9NRX6	74 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	NAGK	Q9UJ70	344 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	EPDR1	Q9UM22	224 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755	FXYD6-FXYD2	A0A087WZ82	144 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	TRAV4	A0A0B4J268	109 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755		A0A1W2PRE2	83 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	GGTLC3	B5MD39	225 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755		K7EQD1	137 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	SIVA1	O15304	175 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	NXPH4	O95158	308 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	TYMS	P04818	313 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	ZNF80	P51504	273 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	SUMO1	P63165	101 aa	Known RBP	4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	ZNF726P1	Q15940	193 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	NEGR1	Q7Z3B1	354 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	OR2T35	Q8NGX2	323 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	KCNS1	Q96KK3	526 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	SDF2L1	Q9HCN8	221 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	C11orf21	Q9P2W6	132 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	PSG8	Q9UQ74	426 aa		4.93	□□□□□ -1.62
VPS52-221	ENST00000495755	FAT1	Q14517	4588 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	BORCS7-ASMT	A0A0B4J1R7	106 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	FBLL1	A6NHQ2	334 aa	Known RBP	4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	C16orf90	A8MZG2	172 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755		K7EQM0	130 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	TAAR5	O14804	337 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	GCG	P01275	180 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	ORM1	P02763	201 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	GYPE	P15421	78 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	LINC00315	P59091	139 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	FLI1	Q01543	452 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	RGS21	Q2M5E4	152 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755		Q6ZRN7	208 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	CYB561D1	Q8N8Q1	229 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	OR4C5	Q8NGB2	326 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	LINC00479	Q96M42	142 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	NDFIP1	Q9BT67	221 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	CYTL1	Q9NRR1	136 aa		4.92	□□□□□ -1.62
VPS52-221	ENST00000495755	CTXND1	A0A1B0GTU2	59 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755		C9JCJ5	164 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	CDK2AP2	O75956	126 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	PFN1	P07737	140 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	GATA1	P15976	413 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	SRI	P30626	198 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	KRTAP10-2	P60368	255 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	ZNF876P	Q49A33	203 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	SMUG1	Q53HV7	270 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	SAPCD1	Q5SSQ6	148 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	DPPA3	Q6W0C5	159 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	SPATA12	Q7Z6I5	190 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	PRNT	Q86SH4	94 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	TMEM75	Q8N9X5	138 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	PTH2	Q96A98	100 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	C9orf85	Q96MD7	179 aa		4.91	□□□□□ -1.62
VPS52-221	ENST00000495755	TRAV34	A0A0B4J273	112 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	LOC100131303	A0A0U1RQF7	123 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	PGPEP1L	A6NFU8	196 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	FAM74A7	A6NL05	159 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755		K7EP13	123 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	ARPC5	O15511	151 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	RS1	O15537	224 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	CIDEA	O60543	219 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	DNAH10OS	P0CZ25	163 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	RNASE3	P12724	160 aa	Known RBP	4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	TIRAP	P58753	221 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	ZFP69	Q49AA0	526 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	CFAP126	Q5VTH2	177 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	SH2D6	Q7Z4S9	175 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	WFDC10B	Q8IUB3	73 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	SLC25A29	Q8N8R3	303 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	PCNP	Q8WW12	178 aa	Known RBP	4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	TXNDC17	Q9BRA2	123 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	NKX6-2	Q9C056	277 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	TNFRSF18	Q9Y5U5	241 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	LY96	Q9Y6Y9	160 aa		4.9	□□□□□ -1.63
VPS52-221	ENST00000495755	TRAV9-2	A0A087WT02	112 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	IGKV3D-20	A0A0C4DH25	116 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	TRBV6-4	A0A1B0GX49	114 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	SMLR1	H3BR10	107 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	PEX7	O00628	323 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	IFNA7	P01567	189 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	CRIP1	P50238	77 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	PPT1	P50897	306 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	FGF8	P55075	233 aa	Predicted RBP	4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	UBE2G2	P60604	165 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	AKR1C8P	Q5T2L2	129 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	COX8C	Q7Z4L0	72 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	NFE4	Q86UQ8	179 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms