RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 ADIRFQ15847 76 aa11.35□□□□□ -0.59
HPS4-216ENST00000493455 TMEM241Q24JQ0 296 aa11.35□□□□□ -0.59
HPS4-216ENST00000493455 UQCC3Q6UW78 93 aa11.35□□□□□ -0.59
HPS4-216ENST00000493455 C16orf74Q96GX8 76 aa11.35□□□□□ -0.59
HPS4-216ENST00000493455 TENM3Q9P273 2699 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 TRGV11A0A075B6L2 103 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 GRIFINA4D1Z8 144 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 FAM74A3Q4VXF1 159 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 COX8CQ7Z4L0 72 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 TMEM263Q8WUH6 116 aaKnown RBP11.34□□□□□ -0.59
HPS4-216ENST00000493455 SMIM12Q96EX1 92 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 KCNS1Q96KK3 526 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 BIN3Q9NQY0 253 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 NAT8Q9UHE5 227 aa11.34□□□□□ -0.59
HPS4-216ENST00000493455 DNAH9Q9NYC9 4486 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 IGKV3D-20A0A0C4DH25 116 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 TMEM189A5PLL7 270 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 SNURFLB1AK76 121 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 P01737 135 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 LINC01551Q86U37 167 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 RNASE7Q9H1E1 156 aaKnown RBP11.33□□□□□ -0.6
HPS4-216ENST00000493455 GSN-AS1Q9NRJ2 163 aa11.33□□□□□ -0.6
HPS4-216ENST00000493455 F8W036 122 aa11.32□□□□□ -0.6
HPS4-216ENST00000493455 S100A4P26447 101 aaKnown RBP11.32□□□□□ -0.6
HPS4-216ENST00000493455 ZNF415Q09FC8 603 aa11.32□□□□□ -0.6
HPS4-216ENST00000493455 RNASE8Q8TDE3 154 aaKnown RBP11.32□□□□□ -0.6
HPS4-216ENST00000493455 LINC00467Q9BRT7 94 aa11.32□□□□□ -0.6
HPS4-216ENST00000493455 NOP10Q9NPE3 64 aaKnown RBP11.32□□□□□ -0.6
HPS4-216ENST00000493455 MDFICQ9P1T7 246 aa11.32□□□□□ -0.6
HPS4-216ENST00000493455 COL7A1Q02388 2944 aa11.32□□□□□ -0.6
HPS4-216ENST00000493455 TMEM218A2RU14 115 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 ERVFC1-1P60608 527 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 RPL23P62829 140 aaKnown RBP11.31□□□□□ -0.6
HPS4-216ENST00000493455 LINC01559Q495D7 138 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 IBA57Q5T440 356 aaKnown RBP11.31□□□□□ -0.6
HPS4-216ENST00000493455 ZNF493Q6ZR52 646 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 NUDT10Q8NFP7 164 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 OR2D3Q8NGH3 330 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 NUDT11Q96G61 164 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 C11orf68Q9H3H3 251 aaKnown RBP11.31□□□□□ -0.6
HPS4-216ENST00000493455 CELA1Q9UNI1 258 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 LY96Q9Y6Y9 160 aa11.31□□□□□ -0.6
HPS4-216ENST00000493455 IGHV3-16A0A0C4DH30 117 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 KRBOX1C9JBD0 128 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 H3BVH4 76 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 ASIPP42127 132 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 TDRG1Q3Y452 100 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 FAM222AQ5U5X8 452 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 SLC7A5P1Q8MH63 180 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 C11orf72Q8NBR9 251 aa11.3□□□□□ -0.6
HPS4-216ENST00000493455 HUWE1Q7Z6Z7 4374 aaKnown RBP11.29□□□□□ -0.6
HPS4-216ENST00000493455 PLAC8L1A1L4L8 177 aa11.29□□□□□ -0.6
HPS4-216ENST00000493455 C19orf71A6NCJ1 209 aa11.29□□□□□ -0.6
HPS4-216ENST00000493455 CXorf65A6NEN9 183 aa11.29□□□□□ -0.6
HPS4-216ENST00000493455 GATCO43716 136 aaKnown RBP11.29□□□□□ -0.6
HPS4-216ENST00000493455 GZMBP10144 247 aa11.29□□□□□ -0.6
HPS4-216ENST00000493455 ADCYAP1P18509 176 aa11.29□□□□□ -0.6
HPS4-216ENST00000493455 TPPP3Q9BW30 176 aa11.29□□□□□ -0.6
HPS4-216ENST00000493455 MRPL16Q9NX20 251 aaKnown RBP11.29□□□□□ -0.6
HPS4-216ENST00000493455 TRGV1A0A0A0MS02 117 aa11.28□□□□□ -0.6
HPS4-216ENST00000493455 DEFB130BP0DP73 79 aa11.28□□□□□ -0.6
HPS4-216ENST00000493455 DEFB130AP0DP74 79 aa11.28□□□□□ -0.6
HPS4-216ENST00000493455 TCL1AP56279 114 aa11.28□□□□□ -0.6
HPS4-216ENST00000493455 ISOC2Q96AB3 205 aa11.28□□□□□ -0.6
HPS4-216ENST00000493455 RPP21Q9H633 154 aaKnown RBP11.28□□□□□ -0.6
HPS4-216ENST00000493455 GAGE12BA1L429 117 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 GAGE7O76087 117 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 GAGE12FP0CL80 117 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 GAGE12GP0CL81 117 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 GAGE12IP0CL82 117 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 SPART-AS1P0CW21 52 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 NANOS2P60321 138 aaKnown RBP11.27□□□□□ -0.61
HPS4-216ENST00000493455 SSTP61278 116 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 C15orf54Q8N8G6 183 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 C11orf45Q8TAV5 145 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 DKK2Q9UBU2 259 aa11.27□□□□□ -0.61
HPS4-216ENST00000493455 MUC21A0A0G2JKD1 596 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 MUC21A0A140T8X8 626 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 ARMS2P0C7Q2 107 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 DAD1P61803 113 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 Q6ZTI0 123 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 SFRP2Q96HF1 295 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 EDA2RQ9HAV5 297 aa11.26□□□□□ -0.61
HPS4-216ENST00000493455 XKRY2A2RUG3 117 aa11.25□□□□□ -0.61
HPS4-216ENST00000493455 RNASE3P12724 160 aaKnown RBP11.25□□□□□ -0.61
HPS4-216ENST00000493455 HTN3P15516 51 aa11.25□□□□□ -0.61
HPS4-216ENST00000493455 RPS20P60866 119 aaKnown RBP11.25□□□□□ -0.61
HPS4-216ENST00000493455 FAM231DQ6ZW35 169 aa11.25□□□□□ -0.61
HPS4-216ENST00000493455 OR10G8Q8NGN5 311 aa11.25□□□□□ -0.61
HPS4-216ENST00000493455 SEC11CQ9BY50 192 aa11.25□□□□□ -0.61
HPS4-216ENST00000493455 LYRM9A8MSI8 78 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 IL17DQ8TAD2 202 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 C9orf85Q96MD7 179 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 SPXQ9BT56 116 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 OSTCQ9NRP0 149 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 PHLDA3Q9Y5J5 127 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 MUC4Q99102 2169 aa11.24□□□□□ -0.61
HPS4-216ENST00000493455 TGP01266 2768 aa11.23□□□□□ -0.61
HPS4-216ENST00000493455 TRGV2A0A075B6R0 118 aa11.23□□□□□ -0.61
HPS4-216ENST00000493455 TEX48A0A1B0GUV7 120 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms