RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 CELSR3Q9NYQ7 3312 aa4.46□□□□□ -1.69
VPS41-214ENST00000490924 IGKV2-40A0A087WW87 121 aaPredicted RBP4.46□□□□□ -1.7
VPS41-214ENST00000490924 A0A087WX48 190 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 IGHV1-69DA0A0B4J2H0 117 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 NXPH4O95158 308 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 IGKV2D-40P01614 121 aaPredicted RBP4.46□□□□□ -1.7
VPS41-214ENST00000490924 ORM1P02763 201 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 PLA2G2AP14555 144 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 TMEM11P17152 192 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 CD24P25063 80 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 LEPP41159 167 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 NDPQ00604 133 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 LOXL1Q08397 574 aaPredicted RBP4.46□□□□□ -1.7
VPS41-214ENST00000490924 PRSS57Q6UWY2 283 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 FOXI2Q6ZQN5 318 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 NRACQ8N912 160 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 Q8N9W7 124 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 PHLDA1Q8WV24 401 aaPredicted RBP4.46□□□□□ -1.7
VPS41-214ENST00000490924 VGLL1Q99990 258 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 VPS25Q9BRG1 176 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 CHAC1Q9BUX1 264 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 SIRPDQ9H106 197 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 MSRB2Q9Y3D2 182 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 HECTD1Q9ULT8 2610 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 CNOT1A5YKK6 2376 aaKnown RBP4.46□□□□□ -1.7
VPS41-214ENST00000490924 ICE1Q9Y2F5 2266 aa4.46□□□□□ -1.7
VPS41-214ENST00000490924 TRBV25-1A0A075B6N4 114 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 IGHV4OR15-8A0A075B7B6 117 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 A0A087WW49 117 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 IGHV7-4-1A0A0J9YVY3 117 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 CLPSL1A2RUU4 121 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 GAGE12HA6NDE8 117 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 NCBP2LA6PVI3 153 aaKnown RBP4.45□□□□□ -1.7
VPS41-214ENST00000490924 E9PLD3 99 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 F8VRH5 84 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 H7C1H1 209 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 OVOL1O14753 267 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 ZNF80P51504 273 aaPredicted RBP4.45□□□□□ -1.7
VPS41-214ENST00000490924 HES1Q14469 280 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 C15orf32Q32M92 178 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 FAM106AQ4KMX7 169 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 C19orf54Q5BKX5 351 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 LYRM7Q5U5X0 104 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 CEND1Q8N111 149 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 DYNAPQ8N1N2 210 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 ATP6V0E2Q8NHE4 81 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 ITLN2Q8WWU7 325 aaPredicted RBP4.45□□□□□ -1.7
VPS41-214ENST00000490924 USMG5Q96IX5 58 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 SMIM2Q9BVW6 85 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 TPPP3Q9BW30 176 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 VCX2Q9H322 139 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 SPCS1Q9Y6A9 102 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 ABCA1O95477 2261 aa4.45□□□□□ -1.7
VPS41-214ENST00000490924 TRAV21A0A0B4J279 112 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 IGKV3D-20A0A0C4DH25 116 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 LOC389332A0A1B0GUA5 103 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.44□□□□□ -1.7
VPS41-214ENST00000490924 H3BUT2 72 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 NDUFA4O00483 81 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 IGF1P05019 195 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 PRSS1P07477 247 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 APELAP0DMC3 54 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 NMUP48645 174 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 Q6ZVH6 145 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 PCP2Q8IVA1 136 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 TOMM6Q96B49 74 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 FAM19A4Q96LR4 140 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 ODF3Q96PU9 254 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 AGPAT4-IT1Q9H0P7 198 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 DKK2Q9UBU2 259 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 HILPDAQ9Y5L2 63 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 PKDREJQ9NTG1 2253 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 ROS1P08922 2347 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 CFAP46Q8IYW2 2715 aa4.44□□□□□ -1.7
VPS41-214ENST00000490924 PLXNB1O43157 2135 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 TRAV8-2A0A0B4J237 113 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 OR11H12B2RN74 326 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 H0Y8G0 127 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 M0QXV9 152 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 NDUFS8O00217 210 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 HOXA3O43365 443 aaPredicted RBP4.43□□□□□ -1.7
VPS41-214ENST00000490924 EFNA4P52798 201 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 SUMO2P61956 95 aaKnown RBP4.43□□□□□ -1.7
VPS41-214ENST00000490924 KLRB1Q12918 225 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 ZC2HC1BQ5TFG8 222 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 Q6YL49 198 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 Q71RC1 249 aaPredicted RBP4.43□□□□□ -1.7
VPS41-214ENST00000490924 LHFPL4Q7Z7J7 247 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 OR11H1Q8NG94 326 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 OR11H2Q8NH07 326 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 GLMPQ8WWB7 406 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 TMEM158Q8WZ71 300 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 DPH3P1Q9H4G8 78 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 TP73-AS1Q9UF72 201 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 ACACAQ13085 2346 aa4.43□□□□□ -1.7
VPS41-214ENST00000490924 ZGRF1Q86YA3 2104 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 TRBV7-3A0A075B6L6 115 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 TMSB15BA0A087X1C1 80 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 TRBV6-5A0A0K0K1A5 114 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms