RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SPRNQ5BIV9 151 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 CFHR4Q92496 578 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 MRPL53Q96EL3 112 aaKnown RBP12.94□□□□□ -0.34
COL7A1-210ENST00000487017 SPANXA1Q9NS26 97 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 H3BMG7 143 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 CGB7P0DN87 165 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 AGPAT4-IT1Q9H0P7 198 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 SHISA9B4DS77 424 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 NUPR1O60356 82 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 GP9P14770 177 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 C12orf74Q32Q52 190 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 ZNF493Q6ZR52 646 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 ARFGEF3Q5TH69 2177 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 IGF2BP2-AS1Q96M15 143 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 DOCK7Q96N67 2140 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 H3BUA1 57 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 HOXB4P17483 251 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-210ENST00000487017 TMEM243Q9BU79 118 aa12.93□□□□□ -0.34
COL7A1-210ENST00000487017 CLPSL2Q6UWE3 100 aa12.92□□□□□ -0.34
COL7A1-210ENST00000487017 TRAV12-1A0A0B4J245 112 aa12.92□□□□□ -0.34
COL7A1-210ENST00000487017 K7EMI3 77 aa12.92□□□□□ -0.34
COL7A1-210ENST00000487017 Q96MF0 132 aa12.92□□□□□ -0.34
COL7A1-210ENST00000487017 SCRT2Q9NQ03 307 aa12.92□□□□□ -0.34
COL7A1-210ENST00000487017 BOD1L2Q8IYS8 172 aa12.92□□□□□ -0.34
COL7A1-210ENST00000487017 FOXE3Q13461 319 aa12.91□□□□□ -0.34
COL7A1-210ENST00000487017 GAGE12HA6NDE8 117 aa12.91□□□□□ -0.34
COL7A1-210ENST00000487017 LENEPQ9Y5L5 61 aa12.91□□□□□ -0.34
COL7A1-210ENST00000487017 PRSS29PA6NIE9 313 aa12.91□□□□□ -0.34
COL7A1-210ENST00000487017 RNASE13Q5GAN3 156 aaKnown RBP12.91□□□□□ -0.34
COL7A1-210ENST00000487017 DEFB125Q8N687 156 aa12.91□□□□□ -0.34
COL7A1-210ENST00000487017 I3L2K1 104 aa12.9□□□□□ -0.34
COL7A1-210ENST00000487017 CRLF1O75462 422 aa12.9□□□□□ -0.34
COL7A1-210ENST00000487017 PATE2Q6UY27 113 aa12.9□□□□□ -0.34
COL7A1-210ENST00000487017 PCP2Q8IVA1 136 aa12.9□□□□□ -0.34
COL7A1-210ENST00000487017 KMT2EQ8IZD2 1858 aa12.9□□□□□ -0.34
COL7A1-210ENST00000487017 J3QLI3 93 aa12.9□□□□□ -0.34
COL7A1-210ENST00000487017 GNRH2O43555 120 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 HERVK_113P63121 156 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 ABCA4P78363 2273 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 GPR179Q6PRD1 2367 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 UTF1Q5T230 341 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 AMTNQ6UX39 209 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 MRAPQ8TCY5 172 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 Q6ZVH6 145 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 PIP4P1Q86T03 277 aa12.89□□□□□ -0.35
COL7A1-210ENST00000487017 F6UB75 175 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 IFITM1P13164 125 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 RHOHQ15669 191 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 PRSS33Q8NF86 280 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 NPBQ8NG41 125 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 COL6A6A6NMZ7 2263 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 WNK2Q9Y3S1 2297 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 ELANEP08246 267 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 IGFL2Q6UWQ7 119 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 CARD19Q96LW7 228 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 USF3Q68DE3 2245 aa12.88□□□□□ -0.35
COL7A1-210ENST00000487017 K7EIM0 57 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 UBL5Q9BZL1 73 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 TINCRA0A1B0GVN0 87 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 GATA1P15976 413 aaPredicted RBP12.87□□□□□ -0.35
COL7A1-210ENST00000487017 FOXI2Q6ZQN5 318 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 RITA1Q96K30 269 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 IGLV2-14P01704 120 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 LINC01545Q5VT33 79 aa12.87□□□□□ -0.35
COL7A1-210ENST00000487017 TDRG1Q3Y452 100 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 COL4A3Q01955 1670 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 LINC00173Q6ZV60 143 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 FAM167A-AS1Q96KT0 104 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 IGKV1-17P01599 117 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 TRAV13-2A0A0B4J235 113 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 CCL25O15444 150 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 ANGP03950 147 aaKnown RBP12.86□□□□□ -0.35
COL7A1-210ENST00000487017 CR1LQ2VPA4 569 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 SPANXDQ9BXN6 97 aa12.86□□□□□ -0.35
COL7A1-210ENST00000487017 PRB1P04280 392 aa12.85□□□□□ -0.35
COL7A1-210ENST00000487017 RS1O15537 224 aa12.85□□□□□ -0.35
COL7A1-210ENST00000487017 IGLV11-55A0A075B6I3 123 aa12.85□□□□□ -0.35
COL7A1-210ENST00000487017 hADV29S1A0JD25 119 aa12.85□□□□□ -0.35
COL7A1-210ENST00000487017 C11orf1Q9H5F2 150 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 SS18L2Q9UHA2 77 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 DSCR8Q96T75 97 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 DKK4Q9UBT3 224 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 CENPVL3A0A0U1RRI6 287 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 CFC1BP0CG36 223 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 CFC1P0CG37 223 aa12.84□□□□□ -0.35
COL7A1-210ENST00000487017 WT1P19544 449 aaPredicted RBP12.84□□□□□ -0.35
COL7A1-210ENST00000487017 IGHV7-81A0A0B4J1V7 117 aa12.83□□□□□ -0.36
COL7A1-210ENST00000487017 NDUFS5O43920 106 aa12.83□□□□□ -0.36
COL7A1-210ENST00000487017 GTSF1Q8WW33 167 aa12.83□□□□□ -0.36
COL7A1-210ENST00000487017 RIF1Q5UIP0 2472 aaKnown RBP12.83□□□□□ -0.36
COL7A1-210ENST00000487017 APOC4P55056 127 aa12.83□□□□□ -0.36
COL7A1-210ENST00000487017 ANKRD39Q53RE8 183 aa12.83□□□□□ -0.36
COL7A1-210ENST00000487017 A0A0J9YY99 117 aa12.82□□□□□ -0.36
COL7A1-210ENST00000487017 CRYGCP07315 174 aa12.82□□□□□ -0.36
COL7A1-210ENST00000487017 DEFB105AQ8NG35 78 aa12.82□□□□□ -0.36
COL7A1-210ENST00000487017 IGFBPL1Q8WX77 278 aa12.82□□□□□ -0.36
COL7A1-210ENST00000487017 GRNP28799 593 aaKnown RBP12.82□□□□□ -0.36
COL7A1-210ENST00000487017 CTSGP08311 255 aa12.82□□□□□ -0.36
COL7A1-210ENST00000487017 NTN5Q8WTR8 489 aaPredicted RBP12.82□□□□□ -0.36
COL7A1-210ENST00000487017 IGLV2-23P01705 113 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms