RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GCGP01275 180 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 S100A9P06702 114 aaKnown RBP5.77□□□□□ -1.49
USP40-216ENST00000485943 CRISP2P16562 243 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 BLOC1S1P78537 153 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 CD300CQ08708 224 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 TMEM183BQ1AE95 376 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 TMEM183AQ8IXX5 376 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 TMEM75Q8N9X5 138 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 PCNPQ8WW12 178 aaKnown RBP5.77□□□□□ -1.49
USP40-216ENST00000485943 FMC1Q96HJ9 113 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 TRAV34A0A0B4J273 112 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 TRGV4A0A0C4DH28 118 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 FAM74A7A6NL05 159 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 KLLNB2CW77 178 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 G3V3Q6 166 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 ORM1P02763 201 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 P0DMU3 169 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 FAM231AP0DMU4 169 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 FAM231CP0DMU5 169 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 AZU1P20160 251 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 FHITP49789 147 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 C12orf74Q32Q52 190 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 C15orf53Q8NAA6 179 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 DAZAP1Q96EP5 407 aaKnown RBP5.76□□□□□ -1.49
USP40-216ENST00000485943 GSN-AS1Q9NRJ2 163 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 ARL2-SNX15V9GYD0 113 aa5.76□□□□□ -1.49
USP40-216ENST00000485943 GGTLC3B5MD39 225 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 PRM2P04554 102 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 TAGLN2P37802 199 aaKnown RBP5.75□□□□□ -1.49
USP40-216ENST00000485943 SULT1A2P50226 295 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 CEBPGP53567 150 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 ZNF726P1Q15940 193 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 ANXA2RQ3ZCQ2 193 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 IBA57Q5T440 356 aaKnown RBP5.75□□□□□ -1.49
USP40-216ENST00000485943 RNASE8Q8TDE3 154 aaKnown RBP5.75□□□□□ -1.49
USP40-216ENST00000485943 FAM210BQ96KR6 192 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 TXNDC17Q9BRA2 123 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 SPXQ9BT56 116 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 ZFP30Q9Y2G7 519 aa5.75□□□□□ -1.49
USP40-216ENST00000485943 LCE6AA0A183 80 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 FABP5P3A8MUU1 101 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 B5MCH6 92 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 C9JCJ5 164 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 IGHV3-53P01767 116 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 PFN1P07737 140 aaKnown RBP5.74□□□□□ -1.49
USP40-216ENST00000485943 MGST1P10620 155 aaKnown RBP5.74□□□□□ -1.49
USP40-216ENST00000485943 ASIPP42127 132 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 TCL1AP56279 114 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 Q6AWC8 147 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 PRR27Q6MZM9 219 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 ALKAL2Q6UX46 152 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 ZFAND2AQ8N6M9 145 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 SYT8Q8NBV8 401 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 MBD3L1Q8WWY6 194 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 C8orf49Q96NF6 230 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 BIN3Q9NQY0 253 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 STAB2Q8WWQ8 2551 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 DNAH9Q9NYC9 4486 aa5.74□□□□□ -1.49
USP40-216ENST00000485943 B4DEV8 164 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 PDE6DO43924 150 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 NKX2-5P52952 324 aaPredicted RBP5.73□□□□□ -1.49
USP40-216ENST00000485943 CCL18P55774 89 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 DAZ2Q13117 558 aaKnown RBP5.73□□□□□ -1.49
USP40-216ENST00000485943 SLAQ13239 276 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 FAM162BQ5T6X4 162 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 Q86TA4 180 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 BAGE2Q86Y30 109 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 OR4C5Q8NGB2 326 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 EIF5A2Q9GZV4 153 aaKnown RBP5.73□□□□□ -1.49
USP40-216ENST00000485943 MED9Q9NWA0 146 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 MRPL16Q9NX20 251 aaKnown RBP5.73□□□□□ -1.49
USP40-216ENST00000485943 FAM30AQ9NZY2 134 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 TENM3Q9P273 2699 aa5.73□□□□□ -1.49
USP40-216ENST00000485943 NACAE9PAV3 2078 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 A0A0J9YY99 117 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 XKRY2A2RUG3 117 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 M0R036 132 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 M0R2P5 195 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 PAX4O43316 350 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 ZNF324O75467 553 aaPredicted RBP5.72□□□□□ -1.49
USP40-216ENST00000485943 GNG4P50150 75 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 RAB14P61106 215 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 MEF2BQ02080 365 aaPredicted RBP5.72□□□□□ -1.49
USP40-216ENST00000485943 ZNF674Q2M3X9 581 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 LGALS9BQ3B8N2 356 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 PRR9Q5T870 116 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 LGALS9CQ6DKI2 356 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 TMEM88Q6PEY1 159 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 Q6ZTI0 123 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 C9orf62Q8N4C0 152 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 SUN5Q8TC36 379 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 LINC00476Q8WZB0 136 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 FAM19A4Q96LR4 140 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 LINC00479Q96M42 142 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 LINC00467Q9BRT7 94 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 VAX2Q9UIW0 290 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 TP53TG3Q9ULZ0 132 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 KLF12Q9Y4X4 402 aa5.72□□□□□ -1.49
USP40-216ENST00000485943 TRAV26-1A0A087WT03 109 aa5.71□□□□□ -1.5
USP40-216ENST00000485943 TMSB15BA0A087X1C1 80 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms