RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 ACTR3CQ9C0K3 210 aaPredicted RBP10.22□□□□□ -0.77
LIMS3-204ENST00000482065 TNFSF18Q9UNG2 199 aa10.22□□□□□ -0.77
LIMS3-204ENST00000482065 RYR1P21817 5038 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 A0A1W2PPQ1 181 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 C16orf90A8MZG2 172 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 G3V3Q6 166 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 NXPH4O95158 308 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 CXorf1O96002 111 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 ZNF80P51504 273 aaPredicted RBP10.21□□□□□ -0.77
LIMS3-204ENST00000482065 SUMO1P63165 101 aaKnown RBP10.21□□□□□ -0.77
LIMS3-204ENST00000482065 NDFIP1Q9BT67 221 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 SDF2L1Q9HCN8 221 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 TMEM167BQ9NRX6 74 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 PSG8Q9UQ74 426 aa10.21□□□□□ -0.77
LIMS3-204ENST00000482065 HSPG2P98160 4391 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 BORCS7-ASMTA0A0B4J1R7 106 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 TRAV4A0A0B4J268 109 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 SERTM2A0A1B0GWG4 89 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 K7EQD1 137 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 M0R2P5 195 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 SIVA1O15304 175 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 IGLV2-11P01706 119 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 ZNF726P1Q15940 193 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 MRPL23Q16540 153 aaKnown RBP10.2□□□□□ -0.78
LIMS3-204ENST00000482065 LYPD5Q6UWN5 251 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 C11orf21Q9P2W6 132 aa10.2□□□□□ -0.78
LIMS3-204ENST00000482065 GCGP01275 180 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 GYPEP15421 78 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 LINC00315P59091 139 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 RGS21Q2M5E4 152 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 NEGR1Q7Z3B1 354 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 PRNTQ86SH4 94 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 TMEM75Q8N9X5 138 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 OR4C5Q8NGB2 326 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 EPDR1Q9UM22 224 aa10.19□□□□□ -0.78
LIMS3-204ENST00000482065 K7EQM0 130 aa10.18□□□□□ -0.78
LIMS3-204ENST00000482065 SRIP30626 198 aa10.18□□□□□ -0.78
LIMS3-204ENST00000482065 FLI1Q01543 452 aaPredicted RBP10.18□□□□□ -0.78
LIMS3-204ENST00000482065 CYB561D1Q8N8Q1 229 aa10.18□□□□□ -0.78
LIMS3-204ENST00000482065 PCNPQ8WW12 178 aaKnown RBP10.18□□□□□ -0.78
LIMS3-204ENST00000482065 KCNS1Q96KK3 526 aa10.18□□□□□ -0.78
LIMS3-204ENST00000482065 DNAH5Q8TE73 4624 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 TRAV34A0A0B4J273 112 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 LOC100131303A0A0U1RQF7 123 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 CTXND1A0A1B0GTU2 59 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 ARPC5O15511 151 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 FGF8P55075 233 aaPredicted RBP10.17□□□□□ -0.78
LIMS3-204ENST00000482065 UBE2G2P60604 165 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 SPATA12Q7Z6I5 190 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 LINC00479Q96M42 142 aa10.17□□□□□ -0.78
LIMS3-204ENST00000482065 A0A1W2PRE2 83 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 C9JCJ5 164 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 SMLR1H3BR10 107 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 TAAR5O14804 337 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 PFN1P07737 140 aaKnown RBP10.16□□□□□ -0.78
LIMS3-204ENST00000482065 SMUG1Q53HV7 270 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 AKR1C8PQ5T2L2 129 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 Q6ZRN7 208 aaPredicted RBP10.16□□□□□ -0.78
LIMS3-204ENST00000482065 TNFRSF18Q9Y5U5 241 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 PCLOQ9Y6V0 5065 aa10.16□□□□□ -0.78
LIMS3-204ENST00000482065 ORM1P02763 201 aa10.15□□□□□ -0.78
LIMS3-204ENST00000482065 BTF3P20290 206 aaKnown RBP10.15□□□□□ -0.78
LIMS3-204ENST00000482065 KRTAP10-2P60368 255 aa10.15□□□□□ -0.78
LIMS3-204ENST00000482065 ZFP69Q49AA0 526 aa10.15□□□□□ -0.78
LIMS3-204ENST00000482065 DPPA3Q6W0C5 159 aa10.15□□□□□ -0.78
LIMS3-204ENST00000482065 WFDC10BQ8IUB3 73 aa10.15□□□□□ -0.78
LIMS3-204ENST00000482065 CYTL1Q9NRR1 136 aa10.15□□□□□ -0.78
LIMS3-204ENST00000482065 APOBP04114 4563 aaKnown RBP10.15□□□□□ -0.78
LIMS3-204ENST00000482065 IFNA7P01567 189 aa10.14□□□□□ -0.79
LIMS3-204ENST00000482065 GATA1P15976 413 aaPredicted RBP10.14□□□□□ -0.79
LIMS3-204ENST00000482065 ZNF876PQ49A33 203 aa10.14□□□□□ -0.79
LIMS3-204ENST00000482065 C9orf85Q96MD7 179 aa10.14□□□□□ -0.79
LIMS3-204ENST00000482065 TXNDC17Q9BRA2 123 aa10.14□□□□□ -0.79
LIMS3-204ENST00000482065 ARL2-SNX15V9GYD0 113 aa10.14□□□□□ -0.79
LIMS3-204ENST00000482065 IGHV3-73A0A0B4J1V6 119 aa10.13□□□□□ -0.79
LIMS3-204ENST00000482065 FBLL1A6NHQ2 334 aaKnown RBP10.13□□□□□ -0.79
LIMS3-204ENST00000482065 FAM74A7A6NL05 159 aa10.13□□□□□ -0.79
LIMS3-204ENST00000482065 PEX7O00628 323 aa10.13□□□□□ -0.79
LIMS3-204ENST00000482065 RNASE3P12724 160 aaKnown RBP10.13□□□□□ -0.79
LIMS3-204ENST00000482065 SAPCD1Q5SSQ6 148 aa10.13□□□□□ -0.79
LIMS3-204ENST00000482065 CFAP126Q5VTH2 177 aa10.13□□□□□ -0.79
LIMS3-204ENST00000482065 MAP1LC3B2A6NCE7 125 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 PGPEP1LA6NFU8 196 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 RS1O15537 224 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 ZNF506Q5JVG8 444 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 Q86TA4 180 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 NHLRC2Q8NBF2 726 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 MAP1LC3BQ9GZQ8 125 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 LY96Q9Y6Y9 160 aa10.12□□□□□ -0.79
LIMS3-204ENST00000482065 IGKV3D-20A0A0C4DH25 116 aa10.11□□□□□ -0.79
LIMS3-204ENST00000482065 PPT1P50897 306 aa10.11□□□□□ -0.79
LIMS3-204ENST00000482065 SLC25A29Q8N8R3 303 aa10.11□□□□□ -0.79
LIMS3-204ENST00000482065 KRTAP4-5Q9BYR2 181 aa10.11□□□□□ -0.79
LIMS3-204ENST00000482065 FHITP49789 147 aa10.1□□□□□ -0.79
LIMS3-204ENST00000482065 TRAV9-2A0A087WT02 112 aa10.09□□□□□ -0.79
LIMS3-204ENST00000482065 CDK2AP2O75956 126 aa10.09□□□□□ -0.79
LIMS3-204ENST00000482065 DNAH10OSP0CZ25 163 aa10.09□□□□□ -0.79
LIMS3-204ENST00000482065 EVI2AP22794 236 aa10.09□□□□□ -0.79
LIMS3-204ENST00000482065 FUSP35637 526 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIMS3-204ENST00000482065 KCNRGQ8N5I3 272 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms