RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 TSPEAR-AS2P59090 65 aa16.33■□□□□ 0.2
SDF4-206ENST00000478938 PDE6HQ13956 83 aa16.33■□□□□ 0.2
SDF4-206ENST00000478938 IL17RELQ6ZVW7 336 aa16.33■□□□□ 0.2
SDF4-206ENST00000478938 TIMD4Q96H15 378 aa16.33■□□□□ 0.2
SDF4-206ENST00000478938 ZZEF1O43149 2961 aa16.32■□□□□ 0.2
SDF4-206ENST00000478938 IGHV3-33P01772 117 aa16.32■□□□□ 0.2
SDF4-206ENST00000478938 ERCC8Q13216 396 aa16.32■□□□□ 0.2
SDF4-206ENST00000478938 BEX4Q9NWD9 120 aaPredicted RBP16.32■□□□□ 0.2
SDF4-206ENST00000478938 A4D1N5 150 aa16.31■□□□□ 0.2
SDF4-206ENST00000478938 KLK5Q9Y337 293 aaPredicted RBP16.31■□□□□ 0.2
SDF4-206ENST00000478938 C11orf86A6NJI1 115 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 C9orf153Q5TBE3 101 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 TRGV5A0A0B4J1U4 118 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 FAM236AA0A1B0GUQ0 79 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 FAM236BA0A1B0GV22 79 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 IGLV1-44P01699 117 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 ATXN8Q156A1 80 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 SLC25A29Q8N8R3 303 aa16.3■□□□□ 0.2
SDF4-206ENST00000478938 MAFAQ8NHW3 353 aaPredicted RBP16.3■□□□□ 0.2
SDF4-206ENST00000478938 SRSF2Q01130 221 aaKnown RBP16.29■□□□□ 0.2
SDF4-206ENST00000478938 FAM19A5Q7Z5A7 132 aaPredicted RBP16.29■□□□□ 0.2
SDF4-206ENST00000478938 C14orf178Q8N769 122 aaPredicted RBP16.29■□□□□ 0.2
SDF4-206ENST00000478938 C11orf21Q9P2W6 132 aa16.29■□□□□ 0.2
SDF4-206ENST00000478938 IGKV3D-20A0A0C4DH25 116 aa16.29■□□□□ 0.2
SDF4-206ENST00000478938 K7EIM0 57 aa16.29■□□□□ 0.2
SDF4-206ENST00000478938 Q1RN00 199 aa16.29■□□□□ 0.2
SDF4-206ENST00000478938 SIGLEC9Q9Y336 463 aa16.29■□□□□ 0.2
SDF4-206ENST00000478938 HES1Q14469 280 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 TMEM200BQ69YZ2 307 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 C2orf66Q6UXQ4 117 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 PLCE1Q9P212 2302 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 NPFFO15130 113 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 NDUFA7O95182 113 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 CEMP1Q6PRD7 247 aaPredicted RBP16.28■□□□□ 0.2
SDF4-206ENST00000478938 TMEM263Q8WUH6 116 aaKnown RBP16.28■□□□□ 0.2
SDF4-206ENST00000478938 DUX3Q96PT4 197 aa16.28■□□□□ 0.2
SDF4-206ENST00000478938 ORMDL2Q53FV1 153 aa16.27■□□□□ 0.2
SDF4-206ENST00000478938 M0R2P5 195 aa16.27■□□□□ 0.19
SDF4-206ENST00000478938 P0DMU3 169 aa16.27■□□□□ 0.19
SDF4-206ENST00000478938 FAM231AP0DMU4 169 aa16.27■□□□□ 0.19
SDF4-206ENST00000478938 FAM231CP0DMU5 169 aa16.27■□□□□ 0.19
SDF4-206ENST00000478938 DYNAPQ8N1N2 210 aa16.27■□□□□ 0.19
SDF4-206ENST00000478938 TRBV10-2A0A0K0K1G8 114 aa16.26■□□□□ 0.19
SDF4-206ENST00000478938 HERVK_113P63121 156 aa16.26■□□□□ 0.19
SDF4-206ENST00000478938 TRGV11A0A075B6L2 103 aa16.26■□□□□ 0.19
SDF4-206ENST00000478938 ZNF672Q499Z4 452 aaPredicted RBP16.26■□□□□ 0.19
SDF4-206ENST00000478938 PMS2CLQ68D20 193 aa16.26■□□□□ 0.19
SDF4-206ENST00000478938 HERVK_113P61574 105 aa16.25■□□□□ 0.19
SDF4-206ENST00000478938 PRB3Q04118 309 aaPredicted RBP16.25■□□□□ 0.19
SDF4-206ENST00000478938 C2orf82Q6UX34 121 aa16.25■□□□□ 0.19
SDF4-206ENST00000478938 UBTD1Q9HAC8 227 aa16.25■□□□□ 0.19
SDF4-206ENST00000478938 TRBV7-7A0A0K0K1E9 115 aa16.25■□□□□ 0.19
SDF4-206ENST00000478938 CRYGBP07316 175 aa16.25■□□□□ 0.19
SDF4-206ENST00000478938 TNFAIP6P98066 277 aaPredicted RBP16.25■□□□□ 0.19
SDF4-206ENST00000478938 ZNF474Q6S9Z5 364 aaPredicted RBP16.25■□□□□ 0.19
SDF4-206ENST00000478938 IGF2-ASQ6U949 168 aa16.25■□□□□ 0.19
SDF4-206ENST00000478938 IGLV4-69A0A075B6H9 119 aa16.24■□□□□ 0.19
SDF4-206ENST00000478938 PRAC2D3DTV9 90 aa16.24■□□□□ 0.19
SDF4-206ENST00000478938 CRYGDP07320 174 aa16.24■□□□□ 0.19
SDF4-206ENST00000478938 DKK4Q9UBT3 224 aa16.24■□□□□ 0.19
SDF4-206ENST00000478938 RPL39LQ96EH5 51 aaKnown RBP16.24■□□□□ 0.19
SDF4-206ENST00000478938 MALRD1Q5VYJ5 2156 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 IGHV7-4-1A0A0J9YVY3 117 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 DLX1P56177 255 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 SPANXN1Q5VSR9 72 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 SPENQ96T58 3664 aaKnown RBP16.23■□□□□ 0.19
SDF4-206ENST00000478938 TRAV25A0A0B4J276 109 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 RBAKDNA6NC62 111 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 CD3EP07766 207 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 LY6DQ14210 128 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 PMVKQ15126 192 aa16.23■□□□□ 0.19
SDF4-206ENST00000478938 J3KT08 172 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 ZNF22P17026 224 aaPredicted RBP16.22■□□□□ 0.19
SDF4-206ENST00000478938 SUMO2P61956 95 aaKnown RBP16.22■□□□□ 0.19
SDF4-206ENST00000478938 C3orf22Q8N5N4 141 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 POM121L12Q8N7R1 296 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 DEFB104AQ8WTQ1 72 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 EDA2RQ9HAV5 297 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 GATA4P43694 442 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 AMELXQ99217 191 aa16.22■□□□□ 0.19
SDF4-206ENST00000478938 NTN3O00634 580 aaPredicted RBP16.21■□□□□ 0.19
SDF4-206ENST00000478938 SPRY2O43597 315 aa16.21■□□□□ 0.19
SDF4-206ENST00000478938 CFIP05156 583 aa16.21■□□□□ 0.19
SDF4-206ENST00000478938 EBI3Q14213 229 aa16.21■□□□□ 0.19
SDF4-206ENST00000478938 TMEM101Q96IK0 257 aa16.21■□□□□ 0.19
SDF4-206ENST00000478938 M0R1B8 84 aa16.21■□□□□ 0.18
SDF4-206ENST00000478938 TRIAP1O43715 76 aa16.21■□□□□ 0.18
SDF4-206ENST00000478938 IGHV1-46P01743 117 aa16.21■□□□□ 0.18
SDF4-206ENST00000478938 SMAD5-AS1Q9Y6J3 95 aa16.21■□□□□ 0.18
SDF4-206ENST00000478938 H7C423 109 aa16.2■□□□□ 0.18
SDF4-206ENST00000478938 TMEM170BQ5T4T1 132 aa16.2■□□□□ 0.18
SDF4-206ENST00000478938 C1orf162Q8NEQ5 155 aaPredicted RBP16.2■□□□□ 0.18
SDF4-206ENST00000478938 LINC01600Q96MT4 127 aa16.2■□□□□ 0.18
SDF4-206ENST00000478938 IGHV3OR16-8A0A075B7F1 116 aa16.19■□□□□ 0.18
SDF4-206ENST00000478938 GFRALQ6UXV0 394 aa16.19■□□□□ 0.18
SDF4-206ENST00000478938 LRRC75A-AS1Q8N1F1 130 aa16.19■□□□□ 0.18
SDF4-206ENST00000478938 ASPMQ8IZT6 3477 aa16.19■□□□□ 0.18
SDF4-206ENST00000478938 RNF182Q8N6D2 247 aa16.19■□□□□ 0.18
SDF4-206ENST00000478938 A0A0B4J2C4 111 aa16.18■□□□□ 0.18
SDF4-206ENST00000478938 MUSTN1Q8IVN3 82 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms