RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 GZMMP51124 257 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 SHANK2-AS3Q9BTD1 123 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 MLST8Q9BVC4 326 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 TRAV26-2A0A0B4J265 109 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 IGHV3-53P01767 116 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 CR1LQ2VPA4 569 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 C1orf122Q6ZSJ8 110 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 LINC00643Q86TS7 51 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 C4orf3Q8WVX3 66 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 ZNF501Q96CX3 271 aaPredicted RBP4.35□□□□□ -1.71
USF3-202ENST00000478658 WFDC1Q9HC57 220 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 NRXN3Q9Y4C0 1643 aa4.35□□□□□ -1.71
USF3-202ENST00000478658 TINCRA0A1B0GVN0 87 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 SNAI2O43623 268 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 RFPL3SP0C7P2 107 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 LY6G6FQ5SQ64 297 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 MED13LQ71F56 2210 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 NYNRINQ9P2P1 1898 aaKnown RBP4.34□□□□□ -1.71
USF3-202ENST00000478658 A0A1W2PR77 199 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 PMS2P5A8MQ11 134 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 HCRTO43612 131 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 IGF1P05019 195 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 RPS27P42677 84 aaKnown RBP4.34□□□□□ -1.71
USF3-202ENST00000478658 DEFB131AP59861 70 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.34□□□□□ -1.71
USF3-202ENST00000478658 HIST2H2BCQ6DN03 193 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 REPIN1Q9BWE0 567 aaKnown RBP4.34□□□□□ -1.71
USF3-202ENST00000478658 PCDH15Q96QU1 1955 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 TRAV4A0A0B4J268 109 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 C12orf77C9JDV5 145 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 IGLV3-25P01717 112 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 GYPEP15421 78 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 LGALS9O00182 355 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 IGKV1-5P01602 117 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 CELA2AP08217 269 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 PATE4P0C8F1 98 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 ZNF672Q499Z4 452 aaPredicted RBP4.34□□□□□ -1.71
USF3-202ENST00000478658 EXOC3-AS1Q8N2X6 119 aa4.34□□□□□ -1.71
USF3-202ENST00000478658 LY75O60449 1722 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 IGHV3OR16-13A0A075B7E8 117 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 IGHV3-74A0A0B4J1X5 117 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 CFC1BP0CG36 223 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 CFC1P0CG37 223 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 COX8AP10176 69 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 FAM19A3Q7Z5A8 133 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 MRPS18BQ9Y676 258 aaKnown RBP4.34□□□□□ -1.72
USF3-202ENST00000478658 SMAD5-AS1Q9Y6J3 95 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 PRR30Q53SZ7 412 aaPredicted RBP4.34□□□□□ -1.72
USF3-202ENST00000478658 ZNF525Q8N782 197 aa4.34□□□□□ -1.72
USF3-202ENST00000478658 IGKV2-40A0A087WW87 121 aaPredicted RBP4.33□□□□□ -1.72
USF3-202ENST00000478658 IGKV2D-40P01614 121 aaPredicted RBP4.33□□□□□ -1.72
USF3-202ENST00000478658 C1QCP02747 245 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 FOXI1Q12951 378 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 NMBP08949 121 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 NPSP0C0P6 89 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 COX17Q14061 63 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 ZNF106Q9H2Y7 1883 aaKnown RBP4.33□□□□□ -1.72
USF3-202ENST00000478658 TRBV7-3A0A075B6L6 115 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 C2orf70A6NJV1 201 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.33□□□□□ -1.72
USF3-202ENST00000478658 HIST1H2BKO60814 126 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 HIST1H2BJP06899 126 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 SPAG11BQ08648 103 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 VPREB3Q9UKI3 123 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 GNG5P63218 68 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 TFF3Q07654 80 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 HIST2H2BDQ6DRA6 164 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 LHFPL6Q9Y693 200 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 TIAF1O95411 115 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 C11orf52Q96A22 123 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 FXYD5Q96DB9 178 aa4.33□□□□□ -1.72
USF3-202ENST00000478658 CCL24O00175 119 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 GREM1O60565 184 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 IGHV1-69P01742 117 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 Q86TA4 180 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 Q9HAA7 133 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 TRBV10-1A0A0K0K1A3 114 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 FAM236AA0A1B0GUQ0 79 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 FAM236BA0A1B0GV22 79 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 TRBV6-6A0A0A6YYG2 114 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 K7EN84 100 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 NCR3O14931 201 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 NXPH4O95158 308 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 PCNX3Q9H6A9 2034 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 DNAJC9-AS1A6NH13 148 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 HIST1H2BOP23527 126 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 HIST1H2BBP33778 126 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 HIST2H2BEQ16778 126 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 SORL1Q92673 2214 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 IGHV4-28A0A0C4DH34 117 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 TEX49A0A1B0GTD5 131 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 Q9H8V8 135 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 IGHV7-4-1A0A0J9YVY3 117 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 K7EP13 123 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 RPL28P46779 137 aaKnown RBP4.32□□□□□ -1.72
USF3-202ENST00000478658 EXPH5Q8NEV8 1989 aa4.32□□□□□ -1.72
USF3-202ENST00000478658 ESM1Q9NQ30 184 aa4.31□□□□□ -1.72
USF3-202ENST00000478658 IGHV3-35A0A0C4DH35 117 aa4.31□□□□□ -1.72
USF3-202ENST00000478658 P0DMU3 169 aa4.31□□□□□ -1.72
USF3-202ENST00000478658 FAM231AP0DMU4 169 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms