RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 WFDC10BQ8IUB3 73 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 OR2G3Q8NGZ4 309 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 TREM1Q9NP99 234 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 M0R2P5 195 aa12.77□□□□□ -0.37
CCDC88B-206ENST00000473405 STAG3L2P0CL84 134 aa12.77□□□□□ -0.37
CCDC88B-206ENST00000473405 STAG3L3P0CL85 134 aa12.77□□□□□ -0.37
CCDC88B-206ENST00000473405 CDC34P49427 236 aaPredicted RBP12.77□□□□□ -0.37
CCDC88B-206ENST00000473405 HSD17B11Q8NBQ5 300 aa12.77□□□□□ -0.37
CCDC88B-206ENST00000473405 ORM1P02763 201 aa12.76□□□□□ -0.37
CCDC88B-206ENST00000473405 Q8N1X5 172 aa12.76□□□□□ -0.37
CCDC88B-206ENST00000473405 SUN5Q8TC36 379 aa12.76□□□□□ -0.37
CCDC88B-206ENST00000473405 SGK494Q96LW2 274 aa12.76□□□□□ -0.37
CCDC88B-206ENST00000473405 LOC100131303A0A0U1RQF7 123 aa12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 OR4C5Q8NGB2 326 aa12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 PCNPQ8WW12 178 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 AQP10Q96PS8 301 aa12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 PSMG3Q9BT73 122 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 SDF2L1Q9HCN8 221 aa12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 LY96Q9Y6Y9 160 aa12.75□□□□□ -0.37
CCDC88B-206ENST00000473405 C9JCJ5 164 aa12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 FUSP35637 526 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 ZNF80P51504 273 aaPredicted RBP12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 ASB13Q8WXK3 278 aa12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 RAB24Q969Q5 203 aa12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 C11orf21Q9P2W6 132 aa12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 SRRM2Q9UQ35 2752 aaKnown RBP12.74□□□□□ -0.37
CCDC88B-206ENST00000473405 GGTLC3B5MD39 225 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 TCRAP04437 139 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 DNAH10OSP0CZ25 163 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 ATP6V0CP27449 155 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 GCHFRP30047 84 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 ERVFC1-1P60608 527 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 C5orf17Q8NAS9 161 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 KCNS1Q96KK3 526 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 TXNDC17Q9BRA2 123 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 SH3BGRL3Q9H299 93 aa12.73□□□□□ -0.37
CCDC88B-206ENST00000473405 SERTM2A0A1B0GWG4 89 aa12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 IGLV2-11P01706 119 aa12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 GATA1P15976 413 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 Q5BKY6 102 aa12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 NFE4Q86UQ8 179 aa12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 SCRT2Q9NQ03 307 aa12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 VPS13BQ7Z7G8 4022 aa12.72□□□□□ -0.37
CCDC88B-206ENST00000473405 TRAV9-2A0A087WT02 112 aa12.71□□□□□ -0.37
CCDC88B-206ENST00000473405 K7EP13 123 aa12.71□□□□□ -0.37
CCDC88B-206ENST00000473405 NDFIP1Q9BT67 221 aa12.71□□□□□ -0.37
CCDC88B-206ENST00000473405 MED28Q9H204 178 aa12.71□□□□□ -0.37
CCDC88B-206ENST00000473405 MSRB1Q9NZV6 116 aa12.71□□□□□ -0.37
CCDC88B-206ENST00000473405 A0A087WTM6 91 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 A0A1B0GVG6 124 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 GCGP01275 180 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 SERF2P84101 59 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 DPPA3Q6W0C5 159 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 PGPEP1Q9NXJ5 209 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 PSG8Q9UQ74 426 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 FAT1Q14517 4588 aa12.7□□□□□ -0.38
CCDC88B-206ENST00000473405 MBP02144 154 aa12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 PFN1P07737 140 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 EVI2AP22794 236 aa12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 CFAP126Q5VTH2 177 aa12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 CDPF1Q6NVV7 123 aa12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 TMEM75Q8N9X5 138 aa12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 C9orf85Q96MD7 179 aa12.69□□□□□ -0.38
CCDC88B-206ENST00000473405 FBLL1A6NHQ2 334 aaKnown RBP12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 K7EQM0 130 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 EREGO14944 169 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 CXorf1O96002 111 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 TIRAPP58753 221 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 SUMO1P63165 101 aaKnown RBP12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 FLI1Q01543 452 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 ZNF876PQ49A33 203 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 SH2D6Q7Z4S9 175 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 CYB561D1Q8N8Q1 229 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 SLC25A29Q8N8R3 303 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 NHLRC2Q8NBF2 726 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 TMEM167BQ9NRX6 74 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 EPDR1Q9UM22 224 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 TNFSF18Q9UNG2 199 aa12.68□□□□□ -0.38
CCDC88B-206ENST00000473405 RNF222A6NCQ9 220 aa12.67□□□□□ -0.38
CCDC88B-206ENST00000473405 TAAR5O14804 337 aa12.67□□□□□ -0.38
CCDC88B-206ENST00000473405 RS1O15537 224 aa12.67□□□□□ -0.38
CCDC88B-206ENST00000473405 CRYGDP07320 174 aa12.67□□□□□ -0.38
CCDC88B-206ENST00000473405 GIPP09681 153 aaPredicted RBP12.67□□□□□ -0.38
CCDC88B-206ENST00000473405 RNASE3P12724 160 aaKnown RBP12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 ZNF726P1Q15940 193 aa12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 ZFP69Q49AA0 526 aa12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 SMUG1Q53HV7 270 aa12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 ZNF506Q5JVG8 444 aa12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 RPL7L1Q6DKI1 246 aaKnown RBP12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 PRNTQ86SH4 94 aa12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 ACTR3CQ9C0K3 210 aaPredicted RBP12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 HERC1Q15751 4861 aa12.66□□□□□ -0.38
CCDC88B-206ENST00000473405 PPT1P50897 306 aa12.65□□□□□ -0.38
CCDC88B-206ENST00000473405 C10orf126Q8N4M7 172 aa12.65□□□□□ -0.38
CCDC88B-206ENST00000473405 PTH2Q96A98 100 aa12.65□□□□□ -0.38
CCDC88B-206ENST00000473405 LINC00479Q96M42 142 aa12.65□□□□□ -0.38
CCDC88B-206ENST00000473405 MYCBP2O75592 4640 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 IGHV3-73A0A0B4J1V6 119 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 IGHV3-38A0A0C4DH36 116 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 TRBV6-4A0A1B0GX49 114 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms