RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 TUBA4BQ9H853 241 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 NAT8Q9UHE5 227 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 RPH3ALQ9UNE2 315 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 TRAV2A0A0B4J234 112 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 TSTD3H0UI37 97 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 ISLRO14498 428 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 ZNF705DP0CH99 300 aaPredicted RBP3.49□□□□□ -1.85
SF3B1-208ENST00000470268 ZNF705BP0CI00 300 aaPredicted RBP3.49□□□□□ -1.85
SF3B1-208ENST00000470268 RPS10P46783 165 aaKnown RBP3.49□□□□□ -1.85
SF3B1-208ENST00000470268 DEFB131AP59861 70 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 NUTF2P61970 127 aaKnown RBP3.49□□□□□ -1.85
SF3B1-208ENST00000470268 PAFAH1B2P68402 229 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 EGFEM1PQ0D2K5 195 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 PSMG4Q5JS54 123 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 LCN12Q6JVE5 192 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 APRG1Q8IVJ8 170 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 LYPD1Q8N2G4 141 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 OR10D4PQ8NGN7 298 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 OR2K2Q8NGT1 345 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 SLC50A1Q9BRV3 221 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 MAP6D1Q9H9H5 199 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 OTORQ9NRC9 128 aa3.49□□□□□ -1.85
SF3B1-208ENST00000470268 NOTCH3Q9UM47 2321 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 TRAV8-1A0A0A6YYK1 113 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 OR4C46A6NHA9 309 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 PDE6DO43924 150 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 CA1P00915 261 aaPredicted RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 TRGC2P03986 189 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 TCRAP04437 139 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 NDUFA6P56556 154 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 PSG9Q00887 426 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 PSG3Q16557 428 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 CENPWQ5EE01 88 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 RNASE7Q9H1E1 156 aaKnown RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 AAMDCQ9H7C9 122 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 EPDR1Q9UM22 224 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 ARL2-SNX15V9GYD0 113 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 IGKV2-40A0A087WW87 121 aaPredicted RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 A0A087WWC5 75 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 A0A1W2PPQ1 181 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 KNCNA6PVL3 124 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 SPINK4O60575 86 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 IGKV2D-40P01614 121 aaPredicted RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 IGLV2-11P01706 119 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 IGLV2-8P01709 118 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 PRB2P02812 416 aaPredicted RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 SLC25A5P05141 298 aaKnown RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 PFN1P07737 140 aaKnown RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 SNRPD3P62318 126 aaKnown RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 C5orf17Q8NAS9 161 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 ZNF738Q8NE65 137 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 MRPL53Q96EL3 112 aaKnown RBP3.48□□□□□ -1.85
SF3B1-208ENST00000470268 VGLL1Q99990 258 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 VCX2Q9H322 139 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 CLEC5AQ9NY25 188 aa3.48□□□□□ -1.85
SF3B1-208ENST00000470268 DNAH3Q8TD57 4116 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 A0A0J9YX75 114 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 RBMY1BA6NDE4 496 aaKnown RBP3.47□□□□□ -1.85
SF3B1-208ENST00000470268 RBMY1EA6NEQ0 496 aaKnown RBP3.47□□□□□ -1.85
SF3B1-208ENST00000470268 GAGE12JA6NER3 117 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 F6UZH7 168 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 H7BYZ3 331 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 PEX7O00628 323 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 RBMY1DP0C7P1 496 aaKnown RBP3.47□□□□□ -1.85
SF3B1-208ENST00000470268 ID1P41134 155 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 TCL1AP56279 114 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 PNRC1Q12796 327 aaPredicted RBP3.47□□□□□ -1.85
SF3B1-208ENST00000470268 ERCC8Q13216 396 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 C10orf25Q5T742 122 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 GFI1BQ5VTD9 330 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 LINC00322Q6ZN03 302 aaPredicted RBP3.47□□□□□ -1.85
SF3B1-208ENST00000470268 GOLT1AQ6ZVE7 132 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 DEFB125Q8N687 156 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 OR8A1Q8NGG7 326 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 Q8TAT8 98 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 C11orf52Q96A22 123 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 SFRP2Q96HF1 295 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 FAM210BQ96KR6 192 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 IGF2BP2-AS1Q96M15 143 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 FAM110AQ9BQ89 295 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 ATG101Q9BSB4 218 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 AGPAT4-IT1Q9H0P7 198 aa3.47□□□□□ -1.85
SF3B1-208ENST00000470268 OR11H12B2RN74 326 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 B4DEV8 164 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 H3BMM0 161 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 PHOX2AO14813 284 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 IGKV3-20P01619 116 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 MGST1P10620 155 aaKnown RBP3.46□□□□□ -1.86
SF3B1-208ENST00000470268 GNG4P50150 75 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 CNN1P51911 297 aaKnown RBP3.46□□□□□ -1.86
SF3B1-208ENST00000470268 PDZD11Q5EBL8 140 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 ACTL10Q5JWF8 245 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 KPRPQ5T749 579 aaPredicted RBP3.46□□□□□ -1.86
SF3B1-208ENST00000470268 SAMD13Q5VXD3 122 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 PRR27Q6MZM9 219 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 AMTNQ6UX39 209 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST3H2BBQ8N257 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 MPLKIPQ8TAP9 179 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 CMTM2Q8TAZ6 248 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 FRZBQ92765 325 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms