RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ALG5Q9Y673 324 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 LY96Q9Y6Y9 160 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 C9JCJ5 164 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 K7EP13 123 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 EREGO14944 169 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 TYMSP04818 313 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 ARL14EPLP0DKL9 152 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 CDC34P49427 236 aaPredicted RBP11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 GNG5P63218 68 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 OR4C5Q8NGB2 326 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 OR2G3Q8NGZ4 309 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 KCNS1Q96KK3 526 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 TXNDC17Q9BRA2 123 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 SDF2L1Q9HCN8 221 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 TNFRSF18Q9Y5U5 241 aa11.27□□□□□ -0.61
CCDC28B-204ENST00000469003 SERTM2A0A1B0GWG4 89 aa11.26□□□□□ -0.61
CCDC28B-204ENST00000469003 STAG3L2P0CL84 134 aa11.26□□□□□ -0.61
CCDC28B-204ENST00000469003 STAG3L3P0CL85 134 aa11.26□□□□□ -0.61
CCDC28B-204ENST00000469003 ERVFC1-1P60608 527 aa11.26□□□□□ -0.61
CCDC28B-204ENST00000469003 WFDC10BQ8IUB3 73 aa11.26□□□□□ -0.61
CCDC28B-204ENST00000469003 PGPEP1Q9NXJ5 209 aa11.26□□□□□ -0.61
CCDC28B-204ENST00000469003 C5orf17Q8NAS9 161 aa11.25□□□□□ -0.61
CCDC28B-204ENST00000469003 HSD17B11Q8NBQ5 300 aa11.25□□□□□ -0.61
CCDC28B-204ENST00000469003 SUN5Q8TC36 379 aa11.25□□□□□ -0.61
CCDC28B-204ENST00000469003 AQP10Q96PS8 301 aa11.25□□□□□ -0.61
CCDC28B-204ENST00000469003 NDFIP1Q9BT67 221 aa11.25□□□□□ -0.61
CCDC28B-204ENST00000469003 PSMG3Q9BT73 122 aaPredicted RBP11.25□□□□□ -0.61
CCDC28B-204ENST00000469003 DNAH10OSP0CZ25 163 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 EVI2AP22794 236 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 SH2D6Q7Z4S9 175 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 ASB13Q8WXK3 278 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 RAB24Q969Q5 203 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 SGK494Q96LW2 274 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 SCRT2Q9NQ03 307 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 MSRB1Q9NZV6 116 aa11.24□□□□□ -0.61
CCDC28B-204ENST00000469003 LOC100131303A0A0U1RQF7 123 aa11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 MBP02144 154 aa11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 TCRAP04437 139 aa11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 GATA1P15976 413 aaPredicted RBP11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 ATP6V0CP27449 155 aa11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 GCHFRP30047 84 aa11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 CDPF1Q6NVV7 123 aa11.23□□□□□ -0.61
CCDC28B-204ENST00000469003 A0A087WTM6 91 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 K7EQM0 130 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 ZNF80P51504 273 aaPredicted RBP11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 TIRAPP58753 221 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 SERF2P84101 59 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 MED28Q9H204 178 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 BATF3Q9NR55 127 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 PSG8Q9UQ74 426 aa11.22□□□□□ -0.61
CCDC28B-204ENST00000469003 FBLL1A6NHQ2 334 aaKnown RBP11.21□□□□□ -0.61
CCDC28B-204ENST00000469003 TAAR5O14804 337 aa11.21□□□□□ -0.61
CCDC28B-204ENST00000469003 PTTG1O95997 202 aa11.21□□□□□ -0.61
CCDC28B-204ENST00000469003 C10orf126Q8N4M7 172 aa11.21□□□□□ -0.61
CCDC28B-204ENST00000469003 TMEM167BQ9NRX6 74 aa11.21□□□□□ -0.61
CCDC28B-204ENST00000469003 C11orf21Q9P2W6 132 aa11.21□□□□□ -0.61
CCDC28B-204ENST00000469003 CIDEAO60543 219 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 CXorf1O96002 111 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 GCGP01275 180 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 CRYGDP07320 174 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 PFN1P07737 140 aaKnown RBP11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 FUSP35637 526 aaKnown RBP eCLIP11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 SUMO1P63165 101 aaKnown RBP11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 FLI1Q01543 452 aaPredicted RBP11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 ZNF876PQ49A33 203 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 NHLRC2Q8NBF2 726 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 EPDR1Q9UM22 224 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 TNFSF18Q9UNG2 199 aa11.2□□□□□ -0.62
CCDC28B-204ENST00000469003 GGTLC3B5MD39 225 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 RS1O15537 224 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 IGLV2-11P01706 119 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 PPT1P50897 306 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 ZFP69Q49AA0 526 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 SMUG1Q53HV7 270 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 CFAP126Q5VTH2 177 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 CYB561D1Q8N8Q1 229 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 SLC25A29Q8N8R3 303 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 TMEM75Q8N9X5 138 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 C9orf85Q96MD7 179 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 ACTR3CQ9C0K3 210 aaPredicted RBP11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 SH3BGRL3Q9H299 93 aa11.19□□□□□ -0.62
CCDC28B-204ENST00000469003 Q5BKY6 102 aa11.18□□□□□ -0.62
CCDC28B-204ENST00000469003 DPPA3Q6W0C5 159 aa11.18□□□□□ -0.62
CCDC28B-204ENST00000469003 PRNTQ86SH4 94 aa11.18□□□□□ -0.62
CCDC28B-204ENST00000469003 PTH2Q96A98 100 aa11.18□□□□□ -0.62
CCDC28B-204ENST00000469003 PRADC1Q9BSG0 188 aa11.18□□□□□ -0.62
CCDC28B-204ENST00000469003 IGHV3-38A0A0C4DH36 116 aa11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 TRBV6-4A0A1B0GX49 114 aa11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 A0A1W2PRE2 83 aa11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 GIPP09681 153 aaPredicted RBP11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 RHOHQ15669 191 aa11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 SAPCD1Q5SSQ6 148 aa11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 INO80EQ8NBZ0 244 aaPredicted RBP11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 BOLA1Q9Y3E2 137 aa11.17□□□□□ -0.62
CCDC28B-204ENST00000469003 PGPEP1LA6NFU8 196 aa11.16□□□□□ -0.62
CCDC28B-204ENST00000469003 RNASE3P12724 160 aaKnown RBP11.16□□□□□ -0.62
CCDC28B-204ENST00000469003 LINC01556Q5JQF7 62 aa11.16□□□□□ -0.62
CCDC28B-204ENST00000469003 ZNF506Q5JVG8 444 aa11.16□□□□□ -0.62
CCDC28B-204ENST00000469003 BORCS7-ASMTA0A0B4J1R7 106 aa11.15□□□□□ -0.62
CCDC28B-204ENST00000469003 IGHV3-73A0A0B4J1V6 119 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms