RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SPANXN1Q5VSR9 72 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 NRACQ8N912 160 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 LINC00477Q96M19 166 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 FOXC2Q99958 501 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 CITED2Q99967 270 aaPredicted RBP8.65□□□□□ -1.03
USP4-205ENST00000431357 TSSC4Q9Y5U2 329 aaPredicted RBP8.65□□□□□ -1.03
USP4-205ENST00000431357 TLN1Q9Y490 2541 aaKnown RBP8.64□□□□□ -1.03
USP4-205ENST00000431357 IGHV3OR16-13A0A075B7E8 117 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 IGHV3-74A0A0B4J1X5 117 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.64□□□□□ -1.03
USP4-205ENST00000431357 TRGV3P03979 118 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 C19orf54Q5BKX5 351 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 GLMPQ8WWB7 406 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 BPESC1Q9GZL8 116 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 ERG28Q9UKR5 140 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 ATMQ13315 3056 aa8.64□□□□□ -1.03
USP4-205ENST00000431357 H3BUT2 72 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 OVOL1O14753 267 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 SMIM13P0DJ93 91 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 RPL24P83731 157 aaKnown RBP8.63□□□□□ -1.03
USP4-205ENST00000431357 ITLN2Q8WWU7 325 aaPredicted RBP8.63□□□□□ -1.03
USP4-205ENST00000431357 IGHV3-49A0A0A0MS15 119 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 TEX48A0A1B0GUV7 120 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 TCTAP57738 103 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 UFC1Q9Y3C8 167 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 SPCS1Q9Y6A9 102 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 KALRNO60229 2985 aa8.63□□□□□ -1.03
USP4-205ENST00000431357 A0A1W2PPM0 123 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 TMEM8BA6NDV4 472 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 NDUFA4O00483 81 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 BRI3O95415 125 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 FABP2P12104 132 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 A0A087WX48 190 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 IGKV2D-26A0A0A0MRZ7 120 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 TRAV21A0A0B4J279 112 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 F8W1H4 67 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 K7EMI3 77 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 MED14OSP0DP75 135 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 ZC2HC1BQ5TFG8 222 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 OR10J6PQ8NGY7 276 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 JMJD8Q96S16 334 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 CHAC1Q9BUX1 264 aa8.62□□□□□ -1.03
USP4-205ENST00000431357 TRAV12-1A0A0B4J245 112 aa8.61□□□□□ -1.03
USP4-205ENST00000431357 H3BUA1 57 aa8.61□□□□□ -1.03
USP4-205ENST00000431357 ORMDL2Q53FV1 153 aa8.61□□□□□ -1.03
USP4-205ENST00000431357 CYSLTR1Q9Y271 337 aa8.61□□□□□ -1.03
USP4-205ENST00000431357 MUC6Q6W4X9 2439 aa8.61□□□□□ -1.03
USP4-205ENST00000431357 DMXL2Q8TDJ6 3036 aa8.61□□□□□ -1.03
USP4-205ENST00000431357 H3BVH4 76 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 SLC25A16P16260 332 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 PLNP26678 52 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 TAL2Q16559 108 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 GTSCR1Q86UQ5 136 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 USMG5Q96IX5 58 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 C20orf78Q9BR46 151 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 SMIM2Q9BVW6 85 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 TMEM160Q9NX00 188 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 TRBV25-1A0A075B6N4 114 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 IGHV1-69DA0A0B4J2H0 117 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 IGHV1-69P01742 117 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 IGF1P05019 195 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 GCSHP23434 173 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 RAB37Q96AX2 223 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 TM2D2Q9BX73 214 aa8.6□□□□□ -1.03
USP4-205ENST00000431357 MRPL35Q9NZE8 188 aaKnown RBP8.6□□□□□ -1.03
USP4-205ENST00000431357 TRAV26-2A0A0B4J265 109 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 TRAV40A0A0B4J280 105 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 ASIPP42127 132 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 TMEM219Q86XT9 240 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 C20orf173Q96LM9 149 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 DPH3P1Q9H4G8 78 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 SS18L2Q9UHA2 77 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 PTPRZ1P23471 2315 aaPredicted RBP8.59□□□□□ -1.03
USP4-205ENST00000431357 H7C1H1 209 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 M0R381 172 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 SOCS3O14543 225 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 PPP1R17O96001 155 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 PRR9Q5T870 116 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 SAMD5Q5TGI4 173 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 CEND1Q8N111 149 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 ZFAND2AQ8N6M9 145 aa8.59□□□□□ -1.03
USP4-205ENST00000431357 S100A4P26447 101 aaKnown RBP8.58□□□□□ -1.04
USP4-205ENST00000431357 F8VRH5 84 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 FXYD2P54710 66 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 SUMO2P61956 95 aaKnown RBP8.57□□□□□ -1.04
USP4-205ENST00000431357 GPHB5Q86YW7 130 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 APRG1Q8IVJ8 170 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 TOMM6Q96B49 74 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 FAM19A4Q96LR4 140 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 YAE1D1Q9NRH1 226 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 SPANXB1Q9NS25 103 aaPredicted RBP8.57□□□□□ -1.04
USP4-205ENST00000431357 LINC01619G3V211 115 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 SPTBN2O15020 2390 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 RPL32P62910 135 aaKnown RBP8.57□□□□□ -1.04
USP4-205ENST00000431357 Q6ZQT7 251 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 VCX2Q9H322 139 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 PHLDA3Q9Y5J5 127 aa8.57□□□□□ -1.04
USP4-205ENST00000431357 IGHG2P01859 326 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 TM4SF20Q53R12 229 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 UNQ9165/PRO28630Q6UXU0 137 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms