RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 FAM231DQ6ZW35 169 aa12□□□□□ -0.49
TTC28-202ENST00000431039 SVBPQ8N300 66 aa12□□□□□ -0.49
TTC28-202ENST00000431039 C20orf144Q9BQM9 153 aa12□□□□□ -0.49
TTC28-202ENST00000431039 C1QTNF4Q9BXJ3 329 aa12□□□□□ -0.49
TTC28-202ENST00000431039 TRAV12-2A0A075B6T6 113 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 B4DEV8 164 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 SH2D1AO60880 128 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 APOC4P55056 127 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 DEFB135Q30KP9 77 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 DAZAP1Q96EP5 407 aaKnown RBP11.99□□□□□ -0.49
TTC28-202ENST00000431039 OSTCQ9NRP0 149 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 XCL2Q9UBD3 114 aa11.99□□□□□ -0.49
TTC28-202ENST00000431039 NUPR2A6NF83 97 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 M0R036 132 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 UBE2CO00762 179 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 INSP01308 110 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 S100A1P23297 94 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 CLRN3Q8NCR9 226 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 NUDT10Q8NFP7 164 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 NUDT11Q96G61 164 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 SFRP2Q96HF1 295 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 HERC2O95714 4834 aa11.98□□□□□ -0.49
TTC28-202ENST00000431039 TRAV12-3A0A0B4J271 114 aa11.97□□□□□ -0.49
TTC28-202ENST00000431039 SPRY2O43597 315 aa11.97□□□□□ -0.49
TTC28-202ENST00000431039 CA1P00915 261 aaPredicted RBP11.97□□□□□ -0.49
TTC28-202ENST00000431039 ERVFC1-1P60608 527 aa11.97□□□□□ -0.49
TTC28-202ENST00000431039 SNAPINO95295 136 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 P01737 135 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 MT-ND4LP03901 98 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 IBA57Q5T440 356 aaKnown RBP11.96□□□□□ -0.49
TTC28-202ENST00000431039 CEMP1Q6PRD7 247 aaPredicted RBP11.96□□□□□ -0.49
TTC28-202ENST00000431039 Q6ZQT7 251 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 C15orf54Q8N8G6 183 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 CSNK1G2-AS1Q8NCQ2 148 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 OR10G8Q8NGN5 311 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 KRTAP17-1Q9BYP8 105 aa11.96□□□□□ -0.49
TTC28-202ENST00000431039 RNASE7Q9H1E1 156 aaKnown RBP11.96□□□□□ -0.49
TTC28-202ENST00000431039 VPS13DQ5THJ4 4388 aa11.96□□□□□ -0.5
TTC28-202ENST00000431039 H7BYZ3 331 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 PPP1R2P9O14990 202 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 GATCO43716 136 aaKnown RBP11.95□□□□□ -0.5
TTC28-202ENST00000431039 RBMY1A1P0DJD3 496 aaKnown RBP11.95□□□□□ -0.5
TTC28-202ENST00000431039 RBMY1CP0DJD4 496 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 RHEBQ15382 184 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 RBMY1FQ15415 496 aaKnown RBP11.95□□□□□ -0.5
TTC28-202ENST00000431039 LINC01559Q495D7 138 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 C1orf158Q8N1D5 194 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 TMEM256Q8N2U0 113 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 ANAPC16Q96DE5 110 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 LINC00467Q9BRT7 94 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 C11orf21Q9P2W6 132 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 TP53TG1Q9Y2A0 90 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 GOLT1BQ9Y3E0 138 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 DNAH6Q9C0G6 4158 aa11.95□□□□□ -0.5
TTC28-202ENST00000431039 C7orf77A4D0Y5 90 aa11.94□□□□□ -0.5
TTC28-202ENST00000431039 ORM1P02763 201 aa11.94□□□□□ -0.5
TTC28-202ENST00000431039 TDRG1Q3Y452 100 aa11.94□□□□□ -0.5
TTC28-202ENST00000431039 RNF212Q495C1 297 aa11.94□□□□□ -0.5
TTC28-202ENST00000431039 Q6ZWC4 215 aa11.94□□□□□ -0.5
TTC28-202ENST00000431039 PYGO2Q9BRQ0 406 aa11.94□□□□□ -0.5
TTC28-202ENST00000431039 RPP21Q9H633 154 aaKnown RBP11.94□□□□□ -0.5
TTC28-202ENST00000431039 IGHV1OR15-1A0A075B7D0 117 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 A0A087WWC5 75 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 IGKV3D-20A0A0C4DH25 116 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 TMEM189A5PLL7 270 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 ZNF705GA8MUZ8 300 aaPredicted RBP11.93□□□□□ -0.5
TTC28-202ENST00000431039 RPS20P60866 119 aaKnown RBP11.93□□□□□ -0.5
TTC28-202ENST00000431039 ANXA2RQ3ZCQ2 193 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 CT83Q5H943 113 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 FAM159AQ6UWV7 190 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 OR2D3Q8NGH3 330 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 KCNS1Q96KK3 526 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 LINC01587Q99440 93 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 CTDSP1Q9GZU7 261 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 KLK5Q9Y337 293 aaPredicted RBP11.93□□□□□ -0.5
TTC28-202ENST00000431039 V9GYV3 84 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 AGRNO00468 2067 aa11.93□□□□□ -0.5
TTC28-202ENST00000431039 CXCL1P09341 107 aa11.92□□□□□ -0.5
TTC28-202ENST00000431039 ZNF705AQ6ZN79 300 aaPredicted RBP11.92□□□□□ -0.5
TTC28-202ENST00000431039 ZNF575Q86XF7 245 aa11.92□□□□□ -0.5
TTC28-202ENST00000431039 RNF183Q96D59 192 aa11.92□□□□□ -0.5
TTC28-202ENST00000431039 NAGKQ9UJ70 344 aa11.92□□□□□ -0.5
TTC28-202ENST00000431039 HECTD4Q9Y4D8 3996 aa11.92□□□□□ -0.5
TTC28-202ENST00000431039 XKRY2A2RUG3 117 aa11.91□□□□□ -0.5
TTC28-202ENST00000431039 MUC21Q5SSG8 566 aa11.91□□□□□ -0.5
TTC28-202ENST00000431039 TMEM208Q9BTX3 173 aa11.91□□□□□ -0.5
TTC28-202ENST00000431039 TMEM242Q9NWH2 141 aa11.91□□□□□ -0.5
TTC28-202ENST00000431039 A8MWL6 223 aa11.9□□□□□ -0.5
TTC28-202ENST00000431039 RPL19P84098 196 aaKnown RBP11.9□□□□□ -0.5
TTC28-202ENST00000431039 ATRAIDQ6UW56 229 aa11.9□□□□□ -0.5
TTC28-202ENST00000431039 RPS10P5Q9NQ39 176 aa11.9□□□□□ -0.5
TTC28-202ENST00000431039 TMSB15BA0A087X1C1 80 aa11.89□□□□□ -0.51
TTC28-202ENST00000431039 FAM231BA6NCW3 169 aa11.89□□□□□ -0.51
TTC28-202ENST00000431039 DNLZQ5SXM8 178 aa11.89□□□□□ -0.51
TTC28-202ENST00000431039 TSKUQ8WUA8 353 aa11.89□□□□□ -0.51
TTC28-202ENST00000431039 PHLDA1Q8WV24 401 aaPredicted RBP11.89□□□□□ -0.51
TTC28-202ENST00000431039 NEU1Q99519 415 aa11.89□□□□□ -0.51
TTC28-202ENST00000431039 TRGV11A0A075B6L2 103 aa11.88□□□□□ -0.51
TTC28-202ENST00000431039 IGHV3OR16-12A0A075B7B8 117 aa11.88□□□□□ -0.51
TTC28-202ENST00000431039 GNRH2O43555 120 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms