RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 CNTFRP26992 372 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 ZNF474Q6S9Z5 364 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-206ENST00000428313 Q6ZS46 218 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 LRRC75A-AS1Q8N1F1 130 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 CFHR4Q92496 578 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 KLK15Q9H2R5 256 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 SLC25A15Q9Y619 301 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 NBEAQ8NFP9 2946 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 IGKV3D-20A0A0C4DH25 116 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 IGHG3P01860 377 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 C2orf66Q6UXQ4 117 aa12.35□□□□□ -0.43
C9orf3-206ENST00000428313 IGHV3-72A0A0B4J1Y9 119 aa12.34□□□□□ -0.43
C9orf3-206ENST00000428313 IGHV1-46P01743 117 aa12.34□□□□□ -0.43
C9orf3-206ENST00000428313 IGHV7-4-1A0A0J9YVY3 117 aa12.34□□□□□ -0.43
C9orf3-206ENST00000428313 LINC00694P0DN24 101 aa12.34□□□□□ -0.43
C9orf3-206ENST00000428313 SUMO2P61956 95 aaKnown RBP12.34□□□□□ -0.43
C9orf3-206ENST00000428313 IMUPQ9GZP8 106 aa12.34□□□□□ -0.43
C9orf3-206ENST00000428313 RBAKDNA6NC62 111 aa12.33□□□□□ -0.44
C9orf3-206ENST00000428313 SMIM9A6NGZ8 99 aa12.33□□□□□ -0.44
C9orf3-206ENST00000428313 DEFB121Q5J5C9 76 aa12.33□□□□□ -0.44
C9orf3-206ENST00000428313 TMEM101Q96IK0 257 aa12.33□□□□□ -0.44
C9orf3-206ENST00000428313 SPANXCQ9NY87 97 aa12.33□□□□□ -0.44
C9orf3-206ENST00000428313 A0A1B0GX51 115 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 A4D1N5 150 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 IGLV4-69A0A075B6H9 119 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 C11orf86A6NJI1 115 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 H3BT86 120 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 NDUFA7O95182 113 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 EBI3Q14213 229 aa12.32□□□□□ -0.44
C9orf3-206ENST00000428313 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-206ENST00000428313 TRBV30A0A0K0K1B3 111 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 J3KT08 172 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 EIF4EBP3O60516 100 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-206ENST00000428313 ZNF56Q15929 161 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 C3orf22Q8N5N4 141 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 CRYGDP07320 174 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 DYNAPQ8N1N2 210 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 AMELXQ99217 191 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 ABCA1O95477 2261 aa12.31□□□□□ -0.44
C9orf3-206ENST00000428313 DLX6P56179 175 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 TCF15Q12870 199 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 SPANXN1Q5VSR9 72 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 IGHV1-69DA0A0B4J2H0 117 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 TSPEAR-AS2P59090 65 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 TMEM170BQ5T4T1 132 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 C9orf153Q5TBE3 101 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 C2orf82Q6UX34 121 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 GFRALQ6UXV0 394 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 C3orf56Q8N813 242 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 C9orf106Q8NAJ2 232 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 C11orf21Q9P2W6 132 aa12.3□□□□□ -0.44
C9orf3-206ENST00000428313 ZNF883P0CG24 379 aa12.29□□□□□ -0.44
C9orf3-206ENST00000428313 C3orf36Q3SXR2 165 aa12.29□□□□□ -0.44
C9orf3-206ENST00000428313 POM121L12Q8N7R1 296 aa12.29□□□□□ -0.44
C9orf3-206ENST00000428313 SMAD5-AS1Q9Y6J3 95 aa12.29□□□□□ -0.44
C9orf3-206ENST00000428313 CACNA1GO43497 2377 aa12.29□□□□□ -0.44
C9orf3-206ENST00000428313 M0R1B8 84 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 UQCRQO14949 82 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 NPFFO15130 113 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 M0R381 172 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 IGHV4-39P01824 125 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 ELANEP08246 267 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 RNF5Q99942 180 aa12.28□□□□□ -0.44
C9orf3-206ENST00000428313 PATE3B3GLJ2 98 aa12.27□□□□□ -0.44
C9orf3-206ENST00000428313 Q1RN00 199 aa12.27□□□□□ -0.44
C9orf3-206ENST00000428313 J3QQQ9 107 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 ATP5G1P05496 136 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 IGHV1-8P0DP01 117 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 MFAP4P55083 255 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 PMVKQ15126 192 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 IGFL4Q6B9Z1 124 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 MAFAQ8NHW3 353 aaPredicted RBP12.27□□□□□ -0.45
C9orf3-206ENST00000428313 LINC00526Q96FQ7 95 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 TRIOO75962 3097 aa12.27□□□□□ -0.45
C9orf3-206ENST00000428313 TRAV25A0A0B4J276 109 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 IGHV1-3A0A0C4DH29 117 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 FAM236AA0A1B0GUQ0 79 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 FAM236BA0A1B0GV22 79 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 CD3EP07766 207 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 LGALS3P17931 250 aaKnown RBP12.26□□□□□ -0.45
C9orf3-206ENST00000428313 RNF223E7ERA6 249 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 NDUFB3O43676 98 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 RPS28P62857 69 aaKnown RBP12.26□□□□□ -0.45
C9orf3-206ENST00000428313 HERVK_113P63121 156 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 PRUNE2Q8WUY3 3088 aa12.26□□□□□ -0.45
C9orf3-206ENST00000428313 H7C2G1 150 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 H7C423 109 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 PPP1R17O96001 155 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 EMP1P54849 157 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 MED13Q9UHV7 2174 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 PRAC2D3DTV9 90 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 TSHBP01222 138 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 ACYP1P07311 99 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 TMEM141Q96I45 108 aa12.25□□□□□ -0.45
C9orf3-206ENST00000428313 LOC107984640A0A0U1RRK4 108 aa12.24□□□□□ -0.45
C9orf3-206ENST00000428313 TRIAP1O43715 76 aa12.24□□□□□ -0.45
C9orf3-206ENST00000428313 FAM19A5Q7Z5A7 132 aaPredicted RBP12.24□□□□□ -0.45
C9orf3-206ENST00000428313 MALRD1Q5VYJ5 2156 aa12.23□□□□□ -0.45
C9orf3-206ENST00000428313 TRGV11A0A075B6L2 103 aa12.23□□□□□ -0.45
C9orf3-206ENST00000428313 OOSP1A8MZH6 123 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms