RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 CELA1Q9UNI1 258 aa8.67□□□□□ -1.02
LINC00539-202ENST00000423575 IGKV3D-20A0A0C4DH25 116 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 ZNF727A8MUV8 499 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 M0R036 132 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 GNRH2O43555 120 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 TYMSP04818 313 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 OR5I1Q13606 314 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 IL17DQ8TAD2 202 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 OCC1Q8TAD7 63 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 SDF2L1Q9HCN8 221 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 GSN-AS1Q9NRJ2 163 aa8.66□□□□□ -1.02
LINC00539-202ENST00000423575 TRGV11A0A075B6L2 103 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 IGHV3-16A0A0C4DH30 117 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 LINC00862A6NCI5 91 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 K7EN84 100 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 TCL1AP56279 114 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 LINC01559Q495D7 138 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 IBA57Q5T440 356 aaKnown RBP8.65□□□□□ -1.02
LINC00539-202ENST00000423575 FAM222AQ5U5X8 452 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 COMMD7Q86VX2 200 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 KCNS1Q96KK3 526 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 MDFICQ9P1T7 246 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 DKK2Q9UBU2 259 aa8.65□□□□□ -1.02
LINC00539-202ENST00000423575 TMSB15BA0A087X1C1 80 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 C19orf71A6NCJ1 209 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 B4DEV8 164 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 KRBOX1C9JBD0 128 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 ORM1P02763 201 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 SFTA3P0C7M3 94 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 RPL19P84098 196 aaKnown RBP8.64□□□□□ -1.03
LINC00539-202ENST00000423575 ZNF415Q09FC8 603 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 SOHLH1Q5JUK2 328 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 LINC01551Q86U37 167 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 NOP10Q9NPE3 64 aaKnown RBP8.64□□□□□ -1.03
LINC00539-202ENST00000423575 TIMM8BQ9Y5J9 83 aaPredicted RBP8.64□□□□□ -1.03
LINC00539-202ENST00000423575 LY96Q9Y6Y9 160 aa8.64□□□□□ -1.03
LINC00539-202ENST00000423575 CXorf65A6NEN9 183 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 SNURFLB1AK76 121 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 SPART-AS1P0CW21 52 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 NANOS2P60321 138 aaKnown RBP8.63□□□□□ -1.03
LINC00539-202ENST00000423575 FAM74A3Q4VXF1 159 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 ZNF575Q86XF7 245 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 C11orf45Q8TAV5 145 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 BIN3Q9NQY0 253 aa8.63□□□□□ -1.03
LINC00539-202ENST00000423575 GRIFINA4D1Z8 144 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 LYRM9A8MSI8 78 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 DAZ2Q13117 558 aaKnown RBP8.62□□□□□ -1.03
LINC00539-202ENST00000423575 TMEM241Q24JQ0 296 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 C12orf74Q32Q52 190 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 UQCC3Q6UW78 93 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 Q6ZTI0 123 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 WWC2-AS2Q96NR7 200 aa8.62□□□□□ -1.03
LINC00539-202ENST00000423575 TEX48A0A1B0GUV7 120 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 P01737 135 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 RNASE3P12724 160 aaKnown RBP8.61□□□□□ -1.03
LINC00539-202ENST00000423575 ASIPP42127 132 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 RPL23P62829 140 aaKnown RBP8.61□□□□□ -1.03
LINC00539-202ENST00000423575 LINC00612Q8N6U2 182 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 NUDT10Q8NFP7 164 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 OR2D3Q8NGH3 330 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 DAZAP1Q96EP5 407 aaKnown RBP8.61□□□□□ -1.03
LINC00539-202ENST00000423575 NUDT11Q96G61 164 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 C9orf85Q96MD7 179 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 RNASE7Q9H1E1 156 aaKnown RBP8.61□□□□□ -1.03
LINC00539-202ENST00000423575 MRPL16Q9NX20 251 aaKnown RBP8.61□□□□□ -1.03
LINC00539-202ENST00000423575 NAT8Q9UHE5 227 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 DNAH7Q8WXX0 4024 aa8.61□□□□□ -1.03
LINC00539-202ENST00000423575 H3BVH4 76 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 CXCL1P09341 107 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 DEFB130BP0DP73 79 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 DEFB130AP0DP74 79 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 ADCYAP1P18509 176 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 ADIRFQ15847 76 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 DNLZQ5SXM8 178 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 Q6ZTC4 211 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 SPXQ9BT56 116 aa8.6□□□□□ -1.03
LINC00539-202ENST00000423575 RPP21Q9H633 154 aaKnown RBP8.6□□□□□ -1.03
LINC00539-202ENST00000423575 TRGV1A0A0A0MS02 117 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 GAGE12BA1L429 117 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 TMEM218A2RU14 115 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 SPINK4O60575 86 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 GAGE7O76087 117 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 GAGE12FP0CL80 117 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 GAGE12GP0CL81 117 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 GAGE12IP0CL82 117 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 GZMBP10144 247 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 S100A4P26447 101 aaKnown RBP8.59□□□□□ -1.03
LINC00539-202ENST00000423575 DAD1P61803 113 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 FAM231DQ6ZW35 169 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 ISOC2Q96AB3 205 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 IL36BQ9NZH7 164 aa8.59□□□□□ -1.03
LINC00539-202ENST00000423575 STARD9Q9P2P6 4700 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 M0R2P5 195 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 ARMS2P0C7Q2 107 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 ERVFC1-1P60608 527 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 RPS20P60866 119 aaKnown RBP8.58□□□□□ -1.04
LINC00539-202ENST00000423575 LGALS9BQ3B8N2 356 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 MUC7Q8TAX7 377 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 SCRT2Q9NQ03 307 aa8.58□□□□□ -1.04
LINC00539-202ENST00000423575 GATCO43716 136 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms