RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 DYNLRB1Q9NP97 96 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 ONECUT1Q9UBC0 465 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 SS18L2Q9UHA2 77 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 A8MWV9 139 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 SUMO2P61956 95 aaKnown RBP8.18□□□□□ -1.1
USP54-204ENST00000422491 ANKRD29Q8N6D5 301 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 CITED1Q99966 193 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 ADGRG4Q8IZF6 3080 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 IGHV3-35A0A0C4DH35 117 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 BUB3O43684 328 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 KLHL30-AS1Q8NEE0 82 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 TACC2O95359 2948 aa8.18□□□□□ -1.1
USP54-204ENST00000422491 A0A0J9YY99 117 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 RNF223E7ERA6 249 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 GAGE5Q13069 117 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 GAGE6Q13070 117 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 ZFAND6Q6FIF0 208 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 C2orf66Q6UXQ4 117 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 H3BVH4 76 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 NHLRC4P0CG21 123 aaPredicted RBP8.17□□□□□ -1.1
USP54-204ENST00000422491 ZFAND3Q9H8U3 227 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 DPM3Q9P2X0 92 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 CUL9Q8IWT3 2517 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 BDP1A6H8Y1 2624 aa8.17□□□□□ -1.1
USP54-204ENST00000422491 TMEM262E9PQX1 116 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 SCGB2A1O75556 95 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 CFC1BP0CG36 223 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 CFC1P0CG37 223 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 SRD5A1P18405 259 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 TRAV8-2A0A0B4J237 113 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 E7EQL1 145 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 LYNX1G3V0Z9 82 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 CRYGDP07320 174 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 LYNX1P0DP58 116 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 C10orf126Q8N4M7 172 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 TEX29Q8N6K0 151 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 RPL39LQ96EH5 51 aaKnown RBP8.16□□□□□ -1.1
USP54-204ENST00000422491 A0A0G2JNJ9 132 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 CENPVL3A0A0U1RRI6 287 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 FAM90A27PA6NNH2 459 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 IGHV3-30P01768 117 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 IGHV3-30-5P0DP03 117 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 HES1Q14469 280 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 FAM57AQ8TBR7 257 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 Q9UFV3 132 aa8.16□□□□□ -1.1
USP54-204ENST00000422491 IGLV4-69A0A075B6H9 119 aa8.15□□□□□ -1.1
USP54-204ENST00000422491 Q6ZS46 218 aa8.15□□□□□ -1.1
USP54-204ENST00000422491 AJUBAQ96IF1 538 aa8.15□□□□□ -1.1
USP54-204ENST00000422491 CLPSL1A2RUU4 121 aa8.15□□□□□ -1.11
USP54-204ENST00000422491 C11orf86A6NJI1 115 aa8.15□□□□□ -1.11
USP54-204ENST00000422491 IGFL3Q6UXB1 125 aa8.15□□□□□ -1.11
USP54-204ENST00000422491 C9orf47Q6ZRZ4 202 aa8.15□□□□□ -1.11
USP54-204ENST00000422491 TPRP12270 2363 aaKnown RBP8.14□□□□□ -1.11
USP54-204ENST00000422491 TTC28Q96AY4 2481 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 IGHV3-66A0A0C4DH42 116 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 M0QXV9 152 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 RHODO00212 210 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 TGFAP01135 160 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 PRR9Q5T870 116 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 LY6G5BQ8NDX9 201 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 MRPL53Q96EL3 112 aaKnown RBP8.14□□□□□ -1.11
USP54-204ENST00000422491 B5MCH6 92 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 HIF1ANQ9NWT6 349 aa8.14□□□□□ -1.11
USP54-204ENST00000422491 LAMA5O15230 3695 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 TSHBP01222 138 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 TSPEAR-AS2P59090 65 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 SLC25A29Q8N8R3 303 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 M0R381 172 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 SLC25A20O43772 301 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 DUSP14O95147 198 aaKnown RBP8.13□□□□□ -1.11
USP54-204ENST00000422491 DPH3P1Q9H4G8 78 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 PRO1854Q9UHT4 67 aa8.13□□□□□ -1.11
USP54-204ENST00000422491 ODF3BA8MYP8 253 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 SPRY2O43597 315 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 ASIPP42127 132 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 Q8N6K4 173 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 WNK2Q9Y3S1 2297 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 IGHV3OR16-13A0A075B7E8 117 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 IGHV3-74A0A0B4J1X5 117 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 CRIP2P52943 208 aaPredicted RBP8.12□□□□□ -1.11
USP54-204ENST00000422491 HERVK_113P61574 105 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 C14orf178Q8N769 122 aaPredicted RBP8.12□□□□□ -1.11
USP54-204ENST00000422491 AMELXQ99217 191 aa8.12□□□□□ -1.11
USP54-204ENST00000422491 IGHV7-81A0A0B4J1V7 117 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 SCGB1C2P0DMR2 95 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 EMP1P54849 157 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 NDUFV3P56181 108 aaKnown RBP8.11□□□□□ -1.11
USP54-204ENST00000422491 C15orf32Q32M92 178 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 PAPPA-AS1Q5QFB9 102 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 GPHB5Q86YW7 130 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 CEP250Q9BV73 2442 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 EIF4EBP3O60516 100 aaPredicted RBP8.11□□□□□ -1.11
USP54-204ENST00000422491 IGF1P05019 195 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 CLEC3BP05452 202 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 PIP4P1Q86T03 277 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 POLEQ07864 2286 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 ARHGAP32A7KAX9 2087 aa8.11□□□□□ -1.11
USP54-204ENST00000422491 TRAV4A0A0B4J268 109 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 IGHV1-69DA0A0B4J2H0 117 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 IGIPA6NJ69 53 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms