RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 KIR3DS1Q14943 382 aa6.66□□□□□ -1.34
SCN9A-203ENST00000409672 SORL1Q92673 2214 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 PTPRQQ9UMZ3 2332 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 C17orf58Q2M2W7 97 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 HRCT1Q6UXD1 115 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 Q86TA4 180 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 HHLA3Q9XRX5 114 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 PLXNA2O75051 1894 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 LECT2O14960 151 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 FGF6P10767 208 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 FGF16O43320 207 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 RNF5Q99942 180 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 TANC1Q9C0D5 1861 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 GOLGB1Q14789 3259 aaKnown RBP6.65□□□□□ -1.34
SCN9A-203ENST00000409672 PFN1P07737 140 aaKnown RBP6.65□□□□□ -1.34
SCN9A-203ENST00000409672 RHOHQ15669 191 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 CYYR1Q96J86 154 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 RETNQ9HD89 108 aa6.65□□□□□ -1.34
SCN9A-203ENST00000409672 MRPL27Q9P0M9 148 aaKnown RBP6.65□□□□□ -1.34
SCN9A-203ENST00000409672 MALRD1Q5VYJ5 2156 aa6.65□□□□□ -1.35
SCN9A-203ENST00000409672 TRAV4A0A0B4J268 109 aa6.65□□□□□ -1.35
SCN9A-203ENST00000409672 DEFB125Q8N687 156 aa6.65□□□□□ -1.35
SCN9A-203ENST00000409672 KLK12Q9UKR0 248 aa6.65□□□□□ -1.35
SCN9A-203ENST00000409672 Q6ZR03 302 aa6.65□□□□□ -1.35
SCN9A-203ENST00000409672 OVOL2Q9BRP0 275 aa6.65□□□□□ -1.35
SCN9A-203ENST00000409672 IGKV1-6A0A0C4DH72 117 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 UBL5Q9BZL1 73 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 C2orf66Q6UXQ4 117 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 COX7B2Q8TF08 81 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIGD2BQ4VC39 106 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 DEFB1P60022 68 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 INAFM2P0DMQ5 153 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 RITA1Q96K30 269 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BKO60814 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BJP06899 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BOP23527 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BBP33778 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BDP58876 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BCP62807 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST2H2BEQ16778 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 MRPL51Q4U2R6 128 aaKnown RBP6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BHQ93079 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BNQ99877 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 HIST1H2BMQ99879 126 aa6.64□□□□□ -1.35
SCN9A-203ENST00000409672 SHISA9B4DS77 424 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 LYPD3O95274 346 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 PCNX3Q9H6A9 2034 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 ARHGAP32A7KAX9 2087 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 Q6ZRM9 215 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 TMEM141Q96I45 108 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 NDUFA12Q9UI09 145 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 TRAV9-1A0A075B6T8 112 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 LOXP28300 417 aaPredicted RBP6.63□□□□□ -1.35
SCN9A-203ENST00000409672 SYS1-DBNDD2H3BUS1 97 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 FOXI1Q12951 378 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 DAND5Q8N907 189 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 ATG2AQ2TAZ0 1938 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 LINC01551Q86U37 167 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 SIGLEC8Q9NYZ4 499 aa6.63□□□□□ -1.35
SCN9A-203ENST00000409672 A0A087WWC5 75 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 WFDC9Q8NEX5 89 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 MRPL23Q16540 153 aaKnown RBP6.62□□□□□ -1.35
SCN9A-203ENST00000409672 ATP6V0E2Q8NHE4 81 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 C11orf45Q8TAV5 145 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 PCDH15Q96QU1 1955 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 ANKRD39Q53RE8 183 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 LY6G6FQ5SQ64 297 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 Q8NFD4 153 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 THSD7BQ9C0I4 1608 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 IFITM2Q01629 132 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 ZNF833PQ6ZTB9 187 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 CENPVL3A0A0U1RRI6 287 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 K7ERJ3 54 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 COX7A2LO14548 114 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 Q9H8V8 135 aa6.62□□□□□ -1.35
SCN9A-203ENST00000409672 SPG11Q96JI7 2443 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 FAM215AQ9Y5M1 114 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 IGLL1P15814 213 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 SLAQ13239 276 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 C1orf194Q5T5A4 169 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 IGKV4-1P06312 121 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 RPL39LQ96EH5 51 aaKnown RBP6.61□□□□□ -1.35
SCN9A-203ENST00000409672 SMPXQ9UHP9 88 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 NUP210Q8TEM1 1887 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-203ENST00000409672 A0A0J9YWU9 116 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 LINC01549A6NIU2 74 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 ZC2HC1AQ96GY0 325 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 DYNAPQ8N1N2 210 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 NDUFA4L2Q9NRX3 87 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 HCFC1P51610 2035 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 ATP5G1P05496 136 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 LYPD1Q8N2G4 141 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 AJUBAQ96IF1 538 aa6.61□□□□□ -1.35
SCN9A-203ENST00000409672 RAI1Q7Z5J4 1906 aaPredicted RBP6.6□□□□□ -1.35
SCN9A-203ENST00000409672 BTCP35070 178 aa6.6□□□□□ -1.35
SCN9A-203ENST00000409672 C3orf79P0CE67 100 aa6.6□□□□□ -1.35
SCN9A-203ENST00000409672 PLA2G2CQ5R387 149 aa6.6□□□□□ -1.35
SCN9A-203ENST00000409672 C16orf74Q96GX8 76 aa6.6□□□□□ -1.35
SCN9A-203ENST00000409672 SRSF8Q9BRL6 282 aaKnown RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms