RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 EIF4E3Q8N5X7 224 aaKnown RBP6.63□□□□□ -1.35
VPS53-203ENST00000401468 DERL1Q9BUN8 251 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 XCL2Q9UBD3 114 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 TRAV34A0A0B4J273 112 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 C7orf71A4D174 169 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 LINC00862A6NCI5 91 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 C9JCJ5 164 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 C9JQL5 133 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 INSP01308 110 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 AKR1C3P42330 323 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 TMEM183AQ8IXX5 376 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 IL17DQ8TAD2 202 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 EIF5A2Q9GZV4 153 aaKnown RBP6.62□□□□□ -1.35
VPS53-203ENST00000401468 TREM1Q9NP99 234 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 X6R8D5 127 aa6.62□□□□□ -1.35
VPS53-203ENST00000401468 PLECQ15149 4684 aaKnown RBP6.61□□□□□ -1.35
VPS53-203ENST00000401468 TRAV12-2A0A075B6T6 113 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 SMIM9A6NGZ8 99 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 H7BYZ3 331 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 SPRY2O43597 315 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 LY6G6CO95867 125 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 GPX1P07203 203 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 FXYD7P58549 80 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 UBE2G1P62253 170 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 BTN1A1Q13410 526 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 PEA15Q15121 130 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 ZNF674Q2M3X9 581 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 TDRG1Q3Y452 100 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 PRNTQ86SH4 94 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 SGK494Q96LW2 274 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 C8orf49Q96NF6 230 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 NDFIP1Q9BT67 221 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 PARLQ9H300 379 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 TP53TG3Q9ULZ0 132 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 PLA2G2DQ9UNK4 145 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 LY96Q9Y6Y9 160 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 FRAS1Q86XX4 4008 aa6.61□□□□□ -1.35
VPS53-203ENST00000401468 PFN1P07737 140 aaKnown RBP6.6□□□□□ -1.35
VPS53-203ENST00000401468 MIFP14174 115 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 CRIP1P50238 77 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 ZNF80P51504 273 aaPredicted RBP6.6□□□□□ -1.35
VPS53-203ENST00000401468 NANOS2P60321 138 aaKnown RBP6.6□□□□□ -1.35
VPS53-203ENST00000401468 SMUG1Q53HV7 270 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 CENPWQ5EE01 88 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 UQCC3Q6UW78 93 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 Q6ZQT7 251 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 ZNF575Q86XF7 245 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 Q8NAQ8 132 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 ZC2HC1AQ96GY0 325 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 PYGO2Q9BRQ0 406 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 GOLT1BQ9Y3E0 138 aa6.6□□□□□ -1.35
VPS53-203ENST00000401468 TRAV12-3A0A0B4J271 114 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 TRAV21A0A0B4J279 112 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 PLAC8L1A1L4L8 177 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 RNASE4P34096 147 aaKnown RBP6.59□□□□□ -1.35
VPS53-203ENST00000401468 ANXA2RQ3ZCQ2 193 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 FAM74A3Q4VXF1 159 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 BAGE2Q86Y30 109 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 OR11H2Q8NH07 326 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 C11orf68Q9H3H3 251 aaKnown RBP6.59□□□□□ -1.35
VPS53-203ENST00000401468 MUC4Q99102 2169 aa6.59□□□□□ -1.35
VPS53-203ENST00000401468 C19orf71A6NCJ1 209 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 GCGP01275 180 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 PLA2G1BP04054 148 aaKnown RBP6.58□□□□□ -1.36
VPS53-203ENST00000401468 GNG4P50150 75 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 DNLZQ5SXM8 178 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 ZNF493Q6ZR52 646 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 RNASE8Q8TDE3 154 aaKnown RBP6.58□□□□□ -1.36
VPS53-203ENST00000401468 LINC00476Q8WZB0 136 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 NIPSNAP3BQ9BS92 247 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 C11orf21Q9P2W6 132 aa6.58□□□□□ -1.36
VPS53-203ENST00000401468 NACAE9PAV3 2078 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 IGHV1OR15-1A0A075B7D0 117 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 FABP5P3A8MUU1 101 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 K7EN84 100 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 KRTAP10-2P60368 255 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 IBA57Q5T440 356 aaKnown RBP6.57□□□□□ -1.36
VPS53-203ENST00000401468 FAM162BQ5T6X4 162 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 C11orf72Q8NBR9 251 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 TMEM263Q8WUH6 116 aaKnown RBP6.57□□□□□ -1.36
VPS53-203ENST00000401468 SMIM7Q9BQ49 75 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 KMT2AQ03164 3969 aa6.57□□□□□ -1.36
VPS53-203ENST00000401468 IGKV3D-20A0A0C4DH25 116 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 IGHV4-28A0A0C4DH34 117 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 TMEM189A5PLL7 270 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 ZNF727A8MUV8 499 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 J3KRW8 73 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 SH2D1AO60880 128 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 CXCL1P09341 107 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 C10orf91Q5T1B1 145 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 FAM231DQ6ZW35 169 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 LINC01551Q86U37 167 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 NHLRC2Q8NBF2 726 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 OCC1Q8TAD7 63 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 C16orf74Q96GX8 76 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 KCNS1Q96KK3 526 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 LINC01587Q99440 93 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 BIN3Q9NQY0 253 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 KIAA1109Q2LD37 5005 aa6.56□□□□□ -1.36
VPS53-203ENST00000401468 PGPEP1LA6NFU8 196 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms