RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 C1orf147Q96MC9 270 aaPredicted RBP8.9□□□□□ -0.98
TTC28-201ENST00000397906 SLAQ13239 276 aa8.9□□□□□ -0.99
TTC28-201ENST00000397906 COL4A3Q01955 1670 aa8.9□□□□□ -0.99
TTC28-201ENST00000397906 ZNF492Q9P255 531 aa8.9□□□□□ -0.99
TTC28-201ENST00000397906 NBASA2RRP1 2371 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 WIPF2Q8TF74 440 aaPredicted RBP8.89□□□□□ -0.99
TTC28-201ENST00000397906 IGHV7-81A0A0B4J1V7 117 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 IGLL5B9A064 214 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 LYL1P12980 280 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 SPART-AS1P0CW21 52 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 ZNF726P1Q15940 193 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 PCNX1Q96RV3 2341 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 WISP2O76076 250 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 PCP4P48539 62 aa8.89□□□□□ -0.99
TTC28-201ENST00000397906 C5orf56Q8N8D9 126 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 IGLC7A0M8Q6 106 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 NDUFA12Q9UI09 145 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 BUB3O43684 328 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 CRYGCP07315 174 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 DOCK11Q5JSL3 2073 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.88□□□□□ -0.996e-7■■■□□ 17.6
TTC28-201ENST00000397906 ADAMTSL5Q6ZMM2 481 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 DNAJC9-AS1A6NH13 148 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 NDUFAF3Q9BU61 184 aa8.88□□□□□ -0.99
TTC28-201ENST00000397906 C16orf74Q96GX8 76 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 HERVK_113P63121 156 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 MORN5Q5VZ52 161 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 PYGO2Q9BRQ0 406 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 INAFM1C9JVW0 142 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 NPYP01303 97 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 C5orf38Q86SI9 138 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 SMAD5-AS1Q9Y6J3 95 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 DENND4AQ7Z401 1863 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 K7EQD1 137 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 hADV29S1A0JD25 119 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 TIRAPP58753 221 aa8.87□□□□□ -0.99
TTC28-201ENST00000397906 ATP5G1P05496 136 aa8.86□□□□□ -0.99
TTC28-201ENST00000397906 TRAV12-1A0A0B4J245 112 aa8.86□□□□□ -0.99
TTC28-201ENST00000397906 PROP1O75360 226 aa8.86□□□□□ -0.99
TTC28-201ENST00000397906 C18orf32Q8TCD1 76 aa8.86□□□□□ -0.99
TTC28-201ENST00000397906 SIGLEC8Q9NYZ4 499 aa8.86□□□□□ -0.99
TTC28-201ENST00000397906 SEM1Q6ZVN7 128 aa8.86□□□□□ -0.99
TTC28-201ENST00000397906 MRPL23Q16540 153 aaKnown RBP8.85□□□□□ -0.99
TTC28-201ENST00000397906 TMEM131Q92545 1883 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 TIMM17AQ99595 171 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 AGPAT4-IT1Q9H0P7 198 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 C19orf84I3L1E1 186 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 DSCR8Q96T75 97 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 C4orf3Q8WVX3 66 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 SIGMAR1Q99720 223 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 SMIM2Q9BVW6 85 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 PRORYQ9H606 182 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 EGR2P11161 476 aaPredicted RBP8.85□□□□□ -0.99
TTC28-201ENST00000397906 V9GYV3 84 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 GTF3C1Q12789 2109 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 LOC105371267A0A1B0GV96 52 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 CAMK2N2Q96S95 79 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 SOCS3O14543 225 aa8.85□□□□□ -0.99
TTC28-201ENST00000397906 CD5LO43866 347 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 NPBQ8NG41 125 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 KLK5Q9Y337 293 aaPredicted RBP8.84□□□□□ -0.99
TTC28-201ENST00000397906 DYSFO75923 2080 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 ZNF503Q96F45 646 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 WFDC11Q8NEX6 87 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 FGF23Q9GZV9 251 aaPredicted RBP8.84□□□□□ -0.99
TTC28-201ENST00000397906 SMIM27A0A1W2PRY6 76 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 WIPF3A6NGB9 483 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 BOD1L2Q8IYS8 172 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 ATP6V0E2Q8NHE4 81 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 ZFHX2Q9C0A1 2572 aaPredicted RBP8.84□□□□□ -0.99
TTC28-201ENST00000397906 HAMPP81172 84 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 TEX48A0A1B0GUV7 120 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 EML6Q6ZMW3 1958 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 SRSF2Q01130 221 aaKnown RBP8.84□□□□□ -0.99
TTC28-201ENST00000397906 MRPL35Q9NZE8 188 aaKnown RBP8.84□□□□□ -0.99
TTC28-201ENST00000397906 DAZAP2Q15038 168 aaPredicted RBP8.84□□□□□ -0.99
TTC28-201ENST00000397906 Q8N9W7 124 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 LTAP01374 205 aa8.84□□□□□ -0.99
TTC28-201ENST00000397906 COL4A4P53420 1690 aaPredicted RBP8.83□□□□□ -1
TTC28-201ENST00000397906 CLPSL1A2RUU4 121 aa8.83□□□□□ -1
TTC28-201ENST00000397906 HIST2H2BDQ6DRA6 164 aa8.83□□□□□ -1
TTC28-201ENST00000397906 AMTNQ6UX39 209 aa8.83□□□□□ -1
TTC28-201ENST00000397906 C2orf70A6NJV1 201 aa8.83□□□□□ -1
TTC28-201ENST00000397906 ADCYAP1P18509 176 aa8.83□□□□□ -1
TTC28-201ENST00000397906 Q8NA96 180 aa8.83□□□□□ -1
TTC28-201ENST00000397906 PLXNB3Q9ULL4 1909 aa8.83□□□□□ -1
TTC28-201ENST00000397906 CT83Q5H943 113 aa8.83□□□□□ -1
TTC28-201ENST00000397906 GAGE2BQ13066 116 aa8.83□□□□□ -1
TTC28-201ENST00000397906 C8orf31Q8N9H6 132 aa8.83□□□□□ -1
TTC28-201ENST00000397906 TINCRA0A1B0GVN0 87 aa8.83□□□□□ -1
TTC28-201ENST00000397906 RPL39LQ96EH5 51 aaKnown RBP8.83□□□□□ -1
TTC28-201ENST00000397906 C9JQL5 133 aa8.82□□□□□ -1
TTC28-201ENST00000397906 ZFAND6Q6FIF0 208 aa8.82□□□□□ -1
TTC28-201ENST00000397906 CFPP27918 469 aa8.82□□□□□ -1
TTC28-201ENST00000397906 HHLA3Q9XRX5 114 aa8.82□□□□□ -1
TTC28-201ENST00000397906 DEFB1P60022 68 aa8.82□□□□□ -1
TTC28-201ENST00000397906 FAM231BA6NCW3 169 aa8.82□□□□□ -1
TTC28-201ENST00000397906 DEFB125Q8N687 156 aa8.82□□□□□ -1
TTC28-201ENST00000397906 FGF6P10767 208 aa8.82□□□□□ -1
TTC28-201ENST00000397906 Q9H8V8 135 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 178.8 ms