RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PRSS29PA6NIE9 313 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 C2orf70A6NJV1 201 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 G3V318 75 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 WIPF1O43516 503 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 MOB4Q9Y3A3 225 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 J3QR89 54 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 ORM1P02763 201 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 KIR3DS1Q14943 382 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 IGFL4Q6B9Z1 124 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 TMEM219Q86XT9 240 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 Q8TAT8 98 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 URB1-AS1Q96HZ7 61 aa7.46□□□□□ -1.21
COL6A3-204ENST00000392003 OR4C46A6NHA9 309 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV4-30-2A0A087WSY4 118 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 SYS1-DBNDD2H3BUS1 97 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 ZNF138P52744 262 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 LY6EQ16553 131 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 Q6ZUT4 128 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 PIP4P2Q8N4L2 257 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 C10orf105Q8TEF2 133 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 VGLL1Q99990 258 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 SMAD5-AS1Q9Y6J3 95 aa7.46□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV3-66A0A0C4DH42 116 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 HLA-DMBP28068 263 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 C5orf56Q8N8D9 126 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GATD1Q8NB37 220 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 HRNRQ86YZ3 2850 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-204ENST00000392003 TRAV41A0A0B4J266 112 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV1-69DA0A0B4J2H0 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GAGE12JA6NER3 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 BUB3O43684 328 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GAGE7O76087 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV1-69P01742 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GAGE12FP0CL80 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GAGE12GP0CL81 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GAGE12IP0CL82 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 GAGE4Q13068 117 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 TWIST1Q15672 202 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 C2orf91Q6ZV80 131 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 OR5A1Q8NGJ0 315 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 AJUBAQ96IF1 538 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 PMCHL2Q9BQD1 86 aa7.45□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV3OR16-13A0A075B7E8 117 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV3-74A0A0B4J1X5 117 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 ORMDL3Q8N138 153 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 PRELID3AQ96N28 172 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 ZFAND3Q9H8U3 227 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 TMEM213A2RRL7 107 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 F5H768 121 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 ZNF493Q6ZR52 646 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 COX8CQ7Z4L0 72 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 BBC3Q96PG8 261 aaPredicted RBP7.44□□□□□ -1.22
COL6A3-204ENST00000392003 DUX5Q96PT3 197 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 CYSLTR1Q9Y271 337 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 CREBBPQ92793 2442 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV3-49A0A0A0MS15 119 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 TRGV3P03979 118 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 PAX8Q06710 450 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 TMEM78Q5T7P6 136 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 FAM104BQ5XKR9 115 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 LINC00173Q6ZV60 143 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 CCDC140Q96MF4 163 aa7.44□□□□□ -1.22
COL6A3-204ENST00000392003 ABCA12Q86UK0 2595 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 LOC389332A0A1B0GUA5 103 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 LINC01548A6NM66 108 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 K7EMI3 77 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 MSMBP08118 114 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 TMEM97Q5BJF2 176 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 ZNF843Q8N446 348 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 FAM223BA6NKX1 122 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 D6R8Y8 96 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 H3BRM9 83 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 CKS2P33552 79 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 ERCC8Q13216 396 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 KLK9Q2XQG4 91 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 FAM159AQ6UWV7 190 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 FAM223AQ8IWN6 122 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 AMN1Q8IY45 258 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 LINC00527Q9UJ94 153 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 KLK9Q9UKQ9 250 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 RBAKDNA6NC62 111 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 B4DSR2 109 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 DSCR9P59020 149 aa7.43□□□□□ -1.22
COL6A3-204ENST00000392003 DCHS2Q6V1P9 2916 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 F8WDY8 70 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 CRXO43186 299 aaPredicted RBP7.42□□□□□ -1.22
COL6A3-204ENST00000392003 LINC00694P0DN24 101 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 AMTNQ6UX39 209 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 RNF182Q8N6D2 247 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 SCRT2Q9NQ03 307 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 FABP2P12104 132 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 ZNF80P51504 273 aaPredicted RBP7.42□□□□□ -1.22
COL6A3-204ENST00000392003 MRPL51Q4U2R6 128 aaKnown RBP7.42□□□□□ -1.22
COL6A3-204ENST00000392003 C16orf92Q96LL3 132 aa7.42□□□□□ -1.22
COL6A3-204ENST00000392003 CCDC168Q8NDH2 2452 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 IFI27P40305 119 aaPredicted RBP7.41□□□□□ -1.22
COL6A3-204ENST00000392003 MAPK1IP1LQ8NDC0 245 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 A6NDN8 102 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 PRAC2D3DTV9 90 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms