RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 TMEM14CQ9P0S9 112 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 RIGQ13278 110 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 RNF151Q2KHN1 245 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 UNQ9165/PRO28630Q6UXU0 137 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 C18orf65Q6ZTR6 163 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 DEFB125Q8N687 156 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 VPS25Q9BRG1 176 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 LGALS1P09382 135 aaKnown RBP9.49□□□□□ -0.89
CIITA-202ENST00000381835 ARMS2P0C7Q2 107 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 ZC2HC1AQ96GY0 325 aa9.49□□□□□ -0.89
CIITA-202ENST00000381835 IGHV3OR16-13A0A075B7E8 117 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 IGHV3-49A0A0A0MS15 119 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 IGHV3-74A0A0B4J1X5 117 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 NDUFA4O00483 81 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 NDUFA7O95182 113 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 S100A7AQ86SG5 101 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 AP5S1Q9NUS5 200 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 WNK1Q9H4A3 2382 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 A0A087X0K7 114 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 CLPSL1A2RUU4 121 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 HIST1H1AQ02539 215 aaPredicted RBP9.48□□□□□ -0.89
CIITA-202ENST00000381835 DEFB136Q30KP8 78 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 LINC01545Q5VT33 79 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 PRSS3P2Q8NHM4 247 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 METTL26Q96S19 204 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 ASCL2Q99929 193 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 TPPP3Q9BW30 176 aa9.48□□□□□ -0.89
CIITA-202ENST00000381835 IGHV3-66A0A0C4DH42 116 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 TRBV6-1A0A0K0K1D8 114 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 CD28P10747 220 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 FA2HQ7L5A8 372 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 BPIFA4PQ86YQ2 179 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 CLUHP3Q96NS8 147 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 IGHV4OR15-8A0A075B7B6 117 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 A0A087WW49 117 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 K7EQM0 130 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 PRB4P10163 310 aaPredicted RBP9.47□□□□□ -0.89
CIITA-202ENST00000381835 CSN1S1P47710 185 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 AMMECR1LQ6DCA0 310 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 TMEM75Q8N9X5 138 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 C17orf77Q96MU5 243 aa9.47□□□□□ -0.89
CIITA-202ENST00000381835 TRBV19A0A075B6N1 114 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 ZNF785A8K8V0 405 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 FAM106AQ4KMX7 169 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 KLHL30-AS1Q8NEE0 82 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 OR10AG1Q8NH19 301 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 ZNF747Q9BV97 191 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 PSG8Q9UQ74 426 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 RNF24Q9Y225 148 aa9.46□□□□□ -0.9
CIITA-202ENST00000381835 A0A1B0GW15 77 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 A0A1W2PRX2 142 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 COX8AP10176 69 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 S100A7P31151 101 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 TMEM190Q8WZ59 177 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 DUX3Q96PT4 197 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 BUB3O43684 328 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 PROK1P58294 105 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 RPS20P60866 119 aaKnown RBP9.45□□□□□ -0.9
CIITA-202ENST00000381835 PSG3Q16557 428 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 GPHB5Q86YW7 130 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 C4orf3Q8WVX3 66 aa9.45□□□□□ -0.9
CIITA-202ENST00000381835 SERTM2A0A1B0GWG4 89 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 SNAI2O43623 268 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 NCR2O95944 276 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 TM4SF20Q53R12 229 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 GATD1Q8NB37 220 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 OR11H1Q8NG94 326 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 CITED2Q99967 270 aaPredicted RBP9.44□□□□□ -0.9
CIITA-202ENST00000381835 CST9LQ9H4G1 147 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 RPL7P18124 248 aaKnown RBP9.44□□□□□ -0.9
CIITA-202ENST00000381835 HOXD3P31249 432 aaPredicted RBP9.44□□□□□ -0.9
CIITA-202ENST00000381835 CRIP1P50238 77 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 PSG9Q00887 426 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 Q6AWC8 147 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 SIGLEC15Q6ZMC9 328 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 C8orf86Q6ZUL3 223 aa9.44□□□□□ -0.9
CIITA-202ENST00000381835 LOC389332A0A1B0GUA5 103 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 MRPS12O15235 138 aaKnown RBP9.43□□□□□ -0.9
CIITA-202ENST00000381835 IFI27P40305 119 aaPredicted RBP9.43□□□□□ -0.9
CIITA-202ENST00000381835 SYNJ2BPP57105 145 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 LYPD1Q8N2G4 141 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 OR8A1Q8NGG7 326 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 DPF1Q92782 380 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 DAZ1Q9NQZ3 744 aaKnown RBP9.43□□□□□ -0.9
CIITA-202ENST00000381835 CT45A10P0DMU9 189 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 EDN2P20800 178 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 SLURP1P55000 103 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 C2orf91Q6ZV80 131 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 U3KQE9 123 aa9.43□□□□□ -0.9
CIITA-202ENST00000381835 LINC01619G3V211 115 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 OCIAD2Q56VL3 154 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 OR1N2Q8NGR9 330 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 C8orf49Q96NF6 230 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 TSSC4Q9Y5U2 329 aaPredicted RBP9.42□□□□□ -0.9
CIITA-202ENST00000381835 SELENOKQ9Y6D0 94 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 SMAD5-AS1Q9Y6J3 95 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 D6R8Y8 96 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 M0R3E3 92 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 TMEM97Q5BJF2 176 aa9.42□□□□□ -0.9
CIITA-202ENST00000381835 ZNF493Q6ZR52 646 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms