RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 HIST2H2BDQ6DRA6 164 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 C8orf49Q96NF6 230 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 ZNF747Q9BV97 191 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 SCRT2Q9NQ03 307 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 NIPBLQ6KC79 2804 aaeCLIP10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 TEP1Q99973 2627 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 SH2D1AO60880 128 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 LGALS1P09382 135 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 FAM106AQ4KMX7 169 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 LYZL1Q6UWQ5 148 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 MYOZ3Q8TDC0 251 aa10.04□□□□□ -0.8
SQSTM1-201ENST00000360718 H0Y8G0 127 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 CDKN1BP46527 198 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 RBX1P62877 108 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 COTL1Q14019 142 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 FAM104BQ5XKR9 115 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 ORMDL3Q8N138 153 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 TIMM8BQ9Y5J9 83 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 U3KQK5 164 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 MPV17L2Q567V2 206 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 PRELID3AQ96N28 172 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 PRR25Q96S07 402 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 ASCL2Q99929 193 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 C16orf95Q9H693 158 aa10.03□□□□□ -0.8
SQSTM1-201ENST00000360718 CLPSL1A2RUU4 121 aa10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 ZNF207O43670 478 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 NUDT3O95989 172 aa10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 TCTEX1D4Q5JR98 221 aa10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 D6R8Y8 96 aa10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 BUB3O43684 328 aa10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 KHDC1LQ5JSQ8 128 aa10.02□□□□□ -0.81
SQSTM1-201ENST00000360718 C2CD3Q4AC94 2353 aa10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 TMSB15BA0A087X1C1 80 aa10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 IFI27P40305 119 aaPredicted RBP10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 HIST1H1AQ02539 215 aaPredicted RBP10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 UNQ9165/PRO28630Q6UXU0 137 aa10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 GPHB5Q86YW7 130 aa10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 RNASE8Q8TDE3 154 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 DPF1Q92782 380 aa10.01□□□□□ -0.81
SQSTM1-201ENST00000360718 CRLF1O75462 422 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 BVES-AS1Q5T3Y7 98 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 C18orf65Q6ZTR6 163 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 SIGLEC8Q9NYZ4 499 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 IGKV2-40A0A087WW87 121 aaPredicted RBP10□□□□□ -0.81
SQSTM1-201ENST00000360718 NDUFA7O95182 113 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 IGKV2D-40P01614 121 aaPredicted RBP10□□□□□ -0.81
SQSTM1-201ENST00000360718 COX8AP10176 69 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 AMN1Q8IY45 258 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 FER1L6-AS1Q8NA97 138 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 LINC01006Q8NI28 216 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 DAZ1Q9NQZ3 744 aaKnown RBP10□□□□□ -0.81
SQSTM1-201ENST00000360718 UFC1Q9Y3C8 167 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 U3KQE9 123 aa10□□□□□ -0.81
SQSTM1-201ENST00000360718 IGHV3OR16-13A0A075B7E8 117 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 IGHV3-49A0A0A0MS15 119 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 IGHV3-74A0A0B4J1X5 117 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 IGHV3-66A0A0C4DH42 116 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 LOC389332A0A1B0GUA5 103 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 TMEM213A2RRL7 107 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 CKS2P33552 79 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 VAMP3Q15836 100 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 OR4C5Q8NGB2 326 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 MCRIP2Q9BUT9 160 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 MAST4O15021 2626 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 K7EMT4 169 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 TWIST1Q15672 202 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 LGALS9BQ3B8N2 356 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 MRPL51Q4U2R6 128 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 LGALS9CQ6DKI2 356 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 DEFB125Q8N687 156 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 OR1N2Q8NGR9 330 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 C4orf3Q8WVX3 66 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 WFDC12Q8WWY7 111 aa9.99□□□□□ -0.81
SQSTM1-201ENST00000360718 JMJD1CQ15652 2540 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 FABP5P3A8MUU1 101 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 HBDP02042 147 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 OR8A1Q8NGG7 326 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 SMAD5-AS1Q9Y6J3 95 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 IGHV4OR15-8A0A075B7B6 117 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 A0A087WW49 117 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 PPBPP02775 128 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 PRB4P10163 310 aaPredicted RBP9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 Q6ZVH6 145 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 KLHL30-AS1Q8NEE0 82 aa9.98□□□□□ -0.81
SQSTM1-201ENST00000360718 A0A087X0K7 114 aa9.97□□□□□ -0.81
SQSTM1-201ENST00000360718 IGLC6P0CF74 106 aa9.97□□□□□ -0.81
SQSTM1-201ENST00000360718 TM4SF20Q53R12 229 aa9.97□□□□□ -0.81
SQSTM1-201ENST00000360718 IGHV7-4-1A0A0J9YVY3 117 aa9.96□□□□□ -0.81
SQSTM1-201ENST00000360718 ORM1P02763 201 aa9.96□□□□□ -0.81
SQSTM1-201ENST00000360718 HOXD3P31249 432 aaPredicted RBP9.96□□□□□ -0.81
SQSTM1-201ENST00000360718 C11orf44Q8N8P7 122 aa9.96□□□□□ -0.81
SQSTM1-201ENST00000360718 VGLL1Q99990 258 aa9.96□□□□□ -0.81
SQSTM1-201ENST00000360718 A0A096LNJ9 63 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 RBAKDNA6NC62 111 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 LINC01619G3V211 115 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 TAX1BP3O14907 124 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 EDN2P20800 178 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 DEFB136Q30KP8 78 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 SLC50A1Q9BRV3 221 aa9.96□□□□□ -0.82
SQSTM1-201ENST00000360718 RHPN1-AS1Q9BWJ2 59 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms