RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZC2HC1BQ5TFG8 222 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 C2orf66Q6UXQ4 117 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 SPAG8Q99932 426 aaPredicted RBP11.59□□□□□ -0.55
COL17A1-201ENST00000353479 A0A096LPF7 62 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 SLAQ13239 276 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 WFDC11Q8NEX6 87 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 GP9P14770 177 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 NDUFAF3Q9BU61 184 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 Q8N8P6 123 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 MRPL53Q96EL3 112 aaKnown RBP11.59□□□□□ -0.55
COL17A1-201ENST00000353479 A0A1B0GWB2 263 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 CRYGCP07315 174 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 UTF1Q5T230 341 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 LRRC75A-AS1Q8N1F1 130 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 ORAOV1Q8WV07 137 aa11.59□□□□□ -0.55
COL17A1-201ENST00000353479 NOP10Q9NPE3 64 aaKnown RBP11.59□□□□□ -0.55
COL17A1-201ENST00000353479 K7EN84 100 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 PAX4O43316 350 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 PAX2Q02962 417 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 CFHR4Q92496 578 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 TIMM21Q9BVV7 248 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 ATRXP46100 2492 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 A6NDX4 124 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 Q0VG73 95 aa11.58□□□□□ -0.56
COL17A1-201ENST00000353479 EGR2P11161 476 aaPredicted RBP11.58□□□□□ -0.56
COL17A1-201ENST00000353479 BUB3O43684 328 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 RBAKDNA6NC62 111 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 C16orf54Q6UWD8 224 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 IGF2BP2-AS1Q96M15 143 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 GAGE6Q13070 117 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 ZMAT4Q9H898 229 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 DNAJC9-AS1A6NH13 148 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 M0R2P5 195 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 HSD52Q0P140 79 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 LINC00587B1AMM8 73 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 SPRY2O43597 315 aa11.57□□□□□ -0.56
COL17A1-201ENST00000353479 TNFRSF13BO14836 293 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-201ENST00000353479 MRPL36Q9P0J6 103 aaKnown RBP11.56□□□□□ -0.56
COL17A1-201ENST00000353479 IGHV4-31P0DP07 118 aa11.56□□□□□ -0.56
COL17A1-201ENST00000353479 PRIMA1Q86XR5 153 aa11.56□□□□□ -0.56
COL17A1-201ENST00000353479 ODF3BA8MYP8 253 aa11.56□□□□□ -0.56
COL17A1-201ENST00000353479 TMEM243Q9BU79 118 aa11.56□□□□□ -0.56
COL17A1-201ENST00000353479 U3KQE9 123 aa11.56□□□□□ -0.56
COL17A1-201ENST00000353479 C2orf70A6NJV1 201 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 CRIP3Q6Q6R5 217 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 PYGO2Q9BRQ0 406 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 JPT2Q9H910 190 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 CLPSL1A2RUU4 121 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 CGB3P0DN86 165 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 CGB7P0DN87 165 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 CITED2Q99967 270 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-201ENST00000353479 NPYP01303 97 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 Q6ZPA2 131 aa11.55□□□□□ -0.56
COL17A1-201ENST00000353479 WI2-2373I1.2A0A1W2PRP0 233 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 WDR87Q6ZQQ6 2873 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 MYMXA0A1B0GTQ4 84 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 CST9LQ9H4G1 147 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 LENEPQ9Y5L5 61 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 CHAC1Q9BUX1 264 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 IGKV1OR2-108A0A075B7D4 117 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 A0A0J9YY99 117 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 PCP4P48539 62 aa11.54□□□□□ -0.56
COL17A1-201ENST00000353479 TRBV12-3P01733 135 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 C10orf91Q5T1B1 145 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 STPG4Q8N801 248 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 C11orf71Q6IPW1 123 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 TMEM141Q96I45 108 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 LINC00574Q9H8X3 128 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 INS-IGF2F8WCM5 200 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 ZNF625Q96I27 306 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-201ENST00000353479 ERG28Q9UKR5 140 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 DSCAMO60469 2012 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 PROP1O75360 226 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 PYY3Q5JQD4 70 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 LYPD6BQ8NI32 183 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 WIPF2Q8TF74 440 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-201ENST00000353479 C4orf3Q8WVX3 66 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 SIGLEC8Q9NYZ4 499 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 HLA-DRB4P13762 266 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 PIFOQ8TCI5 191 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 PGPEP1Q9NXJ5 209 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 HLA-DRB4X5D2U9 266 aa11.53□□□□□ -0.56
COL17A1-201ENST00000353479 CHD3Q12873 2000 aaKnown RBP11.52□□□□□ -0.56
COL17A1-201ENST00000353479 LINC01548A6NM66 108 aa11.52□□□□□ -0.56
COL17A1-201ENST00000353479 LRP4O75096 1905 aa11.52□□□□□ -0.56
COL17A1-201ENST00000353479 A0A087X0K7 114 aa11.52□□□□□ -0.57
COL17A1-201ENST00000353479 FANCD2OSQ96PS1 177 aa11.52□□□□□ -0.57
COL17A1-201ENST00000353479 SMIM2Q9BVW6 85 aa11.52□□□□□ -0.57
COL17A1-201ENST00000353479 GPHB5Q86YW7 130 aa11.52□□□□□ -0.57
COL17A1-201ENST00000353479 TMEM89A2RUT3 159 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 PMVKQ15126 192 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 VWC2LB2RUY7 222 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 ESDP10768 282 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 MYCNOSP40205 109 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 ZNF479Q96JC4 524 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 K7EMT4 169 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 UNQ9165/PRO28630Q6UXU0 137 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 FAM167A-AS1Q96KT0 104 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.51□□□□□ -0.57
COL17A1-201ENST00000353479 ZNF561-AS1K7EIQ3 104 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms