RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 SCRT2Q9NQ03 307 aa11.4□□□□□ -0.58
TPM3-208ENST00000341485 ITPR3Q14573 2671 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 DLEU1O43261 78 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 IGLV1-40P01703 118 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 CFHR3Q02985 330 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 TMEM86BQ8N661 226 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 OR8A1Q8NGG7 326 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 ZNF702PQ9H963 129 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 A0A0G2JLM5 398 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 IGHV7-4-1A0A0J9YVY3 117 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 PRR9Q5T870 116 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 LCNL1Q6ZST4 164 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 ZNF738Q8NE65 137 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 MS4A6AQ9H2W1 248 aa11.39□□□□□ -0.59
TPM3-208ENST00000341485 SOCS3O14543 225 aa11.38□□□□□ -0.59
TPM3-208ENST00000341485 TCF21O43680 179 aa11.38□□□□□ -0.59
TPM3-208ENST00000341485 HBDP02042 147 aa11.38□□□□□ -0.59
TPM3-208ENST00000341485 PPBPP02775 128 aa11.38□□□□□ -0.59
TPM3-208ENST00000341485 CCDC168Q8NDH2 2452 aa11.38□□□□□ -0.59
TPM3-208ENST00000341485 UNC79Q9P2D8 2635 aa11.38□□□□□ -0.59
TPM3-208ENST00000341485 GAGE1Q13065 139 aa11.37□□□□□ -0.59
TPM3-208ENST00000341485 SCGB2A2Q13296 93 aa11.37□□□□□ -0.59
TPM3-208ENST00000341485 SLC25A34Q6PIV7 304 aa11.37□□□□□ -0.59
TPM3-208ENST00000341485 OR4X2Q8NGF9 303 aa11.37□□□□□ -0.59
TPM3-208ENST00000341485 MAP1LC3AQ9H492 121 aa11.37□□□□□ -0.59
TPM3-208ENST00000341485 ZANQ9Y493 2812 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 TNFRSF6BO95407 300 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 NPSP0C0P6 89 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 GATA1P15976 413 aaPredicted RBP11.36□□□□□ -0.59
TPM3-208ENST00000341485 LINC01546A6NGU7 62 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 DNAJC9-AS1A6NH13 148 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 EVI2AP22794 236 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 SMR3AQ99954 134 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 GOLT1BQ9Y3E0 138 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 LENEPQ9Y5L5 61 aa11.36□□□□□ -0.59
TPM3-208ENST00000341485 TMEM89A2RUT3 159 aa11.35□□□□□ -0.59
TPM3-208ENST00000341485 PSMB8P28062 276 aa11.35□□□□□ -0.59
TPM3-208ENST00000341485 DEFB1P60022 68 aa11.35□□□□□ -0.59
TPM3-208ENST00000341485 LGALS9BQ3B8N2 356 aa11.35□□□□□ -0.59
TPM3-208ENST00000341485 LGALS9CQ6DKI2 356 aa11.35□□□□□ -0.59
TPM3-208ENST00000341485 TMEM160Q9NX00 188 aa11.35□□□□□ -0.59
TPM3-208ENST00000341485 ZNF469Q96JG9 3925 aaPredicted RBP11.35□□□□□ -0.59
TPM3-208ENST00000341485 SNAI2O43623 268 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 CACNG7P62955 275 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 C10orf99Q6UWK7 81 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 ZFAND2AQ8N6M9 145 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 IFI27L1Q96BM0 104 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 LINC00477Q96M19 166 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 TEX15Q9BXT5 2789 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 FASNP49327 2511 aaKnown RBP11.34□□□□□ -0.59
TPM3-208ENST00000341485 J3KRW8 73 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 OVOL1O14753 267 aa11.34□□□□□ -0.59
TPM3-208ENST00000341485 IGHV4-4A0A075B6R2 117 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 LY6G6DO95868 133 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 SRD5A1P18405 259 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 TM4SF20Q53R12 229 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 MPV17L2Q567V2 206 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 Q8N2B8 174 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 OR10J6PQ8NGY7 276 aa11.33□□□□□ -0.6
TPM3-208ENST00000341485 NXT2Q9NPJ8 142 aaKnown RBP11.33□□□□□ -0.6
TPM3-208ENST00000341485 ITPR2Q14571 2701 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 H3BVH4 76 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 COX8AP10176 69 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 Q6ZVH6 145 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 WFDC3Q8IUB2 231 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 RHPN1-AS1Q9BWJ2 59 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 FLNAP21333 2647 aaKnown RBP11.32□□□□□ -0.6
TPM3-208ENST00000341485 HECTD1Q9ULT8 2610 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 ELANEP08246 267 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 RPL11P62913 178 aaKnown RBP11.32□□□□□ -0.6
TPM3-208ENST00000341485 ANKRD39Q53RE8 183 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 OR2K2Q8NGT1 345 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 PEF1Q9UBV8 284 aaKnown RBP11.32□□□□□ -0.6
TPM3-208ENST00000341485 UFC1Q9Y3C8 167 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 SELENOKQ9Y6D0 94 aa11.32□□□□□ -0.6
TPM3-208ENST00000341485 IGKV3-7A0A075B6H7 116 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 IGLV2-18A0A075B6J9 118 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 EDN2P20800 178 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 FCER1GP30273 86 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 LEPP41159 167 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 ZNF124Q15973 351 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 SPANXN1Q5VSR9 72 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 SMIM15Q7Z3B0 74 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 ZNF418Q8TF45 676 aaPredicted RBP11.31□□□□□ -0.6
TPM3-208ENST00000341485 FAM19A4Q96LR4 140 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 ESM1Q9NQ30 184 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 F6UB75 175 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 NUDT3O95989 172 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 Q8N8P6 123 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 NRACQ8N912 160 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 DPF1Q92782 380 aa11.31□□□□□ -0.6
TPM3-208ENST00000341485 TRAV26-2A0A0B4J265 109 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 BVES-AS1Q5T3Y7 98 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 C2orf91Q6ZV80 131 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 ORAOV1Q8WV07 137 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 C18orf15Q96N68 181 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 DAZ1Q9NQZ3 744 aaKnown RBP11.3□□□□□ -0.6
TPM3-208ENST00000341485 COX11Q9Y6N1 276 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 AKAP9Q99996 3911 aa11.3□□□□□ -0.6
TPM3-208ENST00000341485 TRAV21A0A0B4J279 112 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms