RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 APRG1Q8IVJ8 170 aa11.56□□□□□ -0.56
LIMS1-202ENST00000338045 A0A1B0GXF2 115 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 CRISP2P16562 243 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 RPS20P60866 119 aaKnown RBP11.55□□□□□ -0.56
LIMS1-202ENST00000338045 LINC01559Q495D7 138 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 TMEM136Q6ZRR5 245 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 TRAV25A0A0B4J276 109 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 A0A0J9YX75 114 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 MT-ND6P03923 174 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 CD300EQ496F6 205 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-202ENST00000338045 Q6AWC8 147 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 PGLYRP4Q96LB8 373 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 SNHG12Q9BXW3 62 aa11.55□□□□□ -0.56
LIMS1-202ENST00000338045 SNURFLB1AK76 121 aa11.54□□□□□ -0.56
LIMS1-202ENST00000338045 NSUN5P1Q3KNT7 163 aa11.54□□□□□ -0.56
LIMS1-202ENST00000338045 PRR9Q5T870 116 aa11.54□□□□□ -0.56
LIMS1-202ENST00000338045 GDF5OSQ5U4N7 250 aa11.54□□□□□ -0.56
LIMS1-202ENST00000338045 PACRGQ96M98 296 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-202ENST00000338045 ODF3Q96PU9 254 aa11.54□□□□□ -0.56
LIMS1-202ENST00000338045 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-202ENST00000338045 SPAG8Q99932 426 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-202ENST00000338045 HLA-DQA1P01909 254 aa11.53□□□□□ -0.56
LIMS1-202ENST00000338045 FOXI2Q6ZQN5 318 aa11.53□□□□□ -0.56
LIMS1-202ENST00000338045 MRPL18Q9H0U6 180 aaKnown RBP11.53□□□□□ -0.56
LIMS1-202ENST00000338045 PRO1933Q9H354 126 aa11.53□□□□□ -0.56
LIMS1-202ENST00000338045 C11orf21Q9P2W6 132 aa11.53□□□□□ -0.56
LIMS1-202ENST00000338045 IGKV3D-20A0A0C4DH25 116 aa11.52□□□□□ -0.57
LIMS1-202ENST00000338045 KLLNB2CW77 178 aa11.52□□□□□ -0.57
LIMS1-202ENST00000338045 ORM1P02763 201 aa11.52□□□□□ -0.57
LIMS1-202ENST00000338045 HBBP68871 147 aa11.52□□□□□ -0.57
LIMS1-202ENST00000338045 EBLN2Q6P2I7 272 aa11.52□□□□□ -0.57
LIMS1-202ENST00000338045 ZNF256Q9Y2P7 627 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-202ENST00000338045 TMSB15BA0A087X1C1 80 aa11.51□□□□□ -0.57
LIMS1-202ENST00000338045 IGLC6P0CF74 106 aa11.51□□□□□ -0.57
LIMS1-202ENST00000338045 CD33P20138 364 aa11.51□□□□□ -0.57
LIMS1-202ENST00000338045 TRAV21A0A0B4J279 112 aa11.51□□□□□ -0.57
LIMS1-202ENST00000338045 A0A1B0GUT8 65 aa11.51□□□□□ -0.57
LIMS1-202ENST00000338045 OR4C46A6NHA9 309 aa11.51□□□□□ -0.57
LIMS1-202ENST00000338045 DUSP14O95147 198 aaKnown RBP11.51□□□□□ -0.57
LIMS1-202ENST00000338045 WNK1Q9H4A3 2382 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 H0Y8G0 127 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 GPX1P07203 203 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 CTRLP40313 264 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 DEFB131AP59861 70 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 CDPF1Q6NVV7 123 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 Q6ZQT7 251 aa11.5□□□□□ -0.57
LIMS1-202ENST00000338045 A8MTW9 85 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 ARMS2P0C7Q2 107 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 NDUFA6P56556 154 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 FER1L6-AS1Q8NA97 138 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 A0A1B0GW15 77 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 CAMPP49913 170 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 RIGQ13278 110 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 KIR3DS1Q14943 382 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 COA6Q5JTJ3 125 aaKnown RBP11.49□□□□□ -0.57
LIMS1-202ENST00000338045 LYZL1Q6UWQ5 148 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 GATD1Q8NB37 220 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 MAP6D1Q9H9H5 199 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 NAGKQ9UJ70 344 aa11.49□□□□□ -0.57
LIMS1-202ENST00000338045 SORL1Q92673 2214 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 IFITM10A6NMD0 228 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 IGLV1-51P01701 117 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 HLA-DRB4P13762 266 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 LEPP41159 167 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 SLAQ13239 276 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 AMTNQ6UX39 209 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 LINC00482Q8N8I6 264 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 OR10D4PQ8NGN7 298 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 ZNF479Q96JC4 524 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 CITED1Q99966 193 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 SPXQ9BT56 116 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 CNFNQ9BYD5 112 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 HLA-DRB4X5D2U9 266 aa11.48□□□□□ -0.57
LIMS1-202ENST00000338045 CBY3A6NI87 242 aa11.47□□□□□ -0.57
LIMS1-202ENST00000338045 APCSP02743 223 aa11.47□□□□□ -0.57
LIMS1-202ENST00000338045 RNASE4P34096 147 aaKnown RBP11.47□□□□□ -0.57
LIMS1-202ENST00000338045 TPPP3Q9BW30 176 aa11.47□□□□□ -0.57
LIMS1-202ENST00000338045 GRIFINA4D1Z8 144 aa11.46□□□□□ -0.57
LIMS1-202ENST00000338045 SAP30O75446 220 aa11.46□□□□□ -0.57
LIMS1-202ENST00000338045 OR2K2Q8NGT1 345 aa11.46□□□□□ -0.57
LIMS1-202ENST00000338045 BORCS7Q96B45 105 aa11.46□□□□□ -0.57
LIMS1-202ENST00000338045 NIPBLQ6KC79 2804 aaeCLIP11.46□□□□□ -0.57
LIMS1-202ENST00000338045 KNCNA6PVL3 124 aa11.46□□□□□ -0.58
LIMS1-202ENST00000338045 F2Z2F3 143 aa11.46□□□□□ -0.58
LIMS1-202ENST00000338045 H3BMM0 161 aa11.46□□□□□ -0.58
LIMS1-202ENST00000338045 PF4P02776 101 aa11.46□□□□□ -0.58
LIMS1-202ENST00000338045 TSPOP30536 169 aa11.46□□□□□ -0.58
LIMS1-202ENST00000338045 SSBP4Q9BWG4 385 aaPredicted RBP11.46□□□□□ -0.58
LIMS1-202ENST00000338045 C7orf71A4D174 169 aa11.45□□□□□ -0.58
LIMS1-202ENST00000338045 ODF3L2Q3SX64 289 aa11.45□□□□□ -0.58
LIMS1-202ENST00000338045 AGRNO00468 2067 aa11.45□□□□□ -0.58
LIMS1-202ENST00000338045 C20orf202A1L168 122 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 ZNF324O75467 553 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-202ENST00000338045 IGKV3-20P01619 116 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 KIAA1644Q3SXP7 199 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 ZNF493Q6ZR52 646 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 VPS25Q9BRG1 176 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 JMJD1CQ15652 2540 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 SNAI2O43623 268 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 OR5AL1P0C617 328 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms