RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 A0A1B0GUT8 65 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 A0A1B0GXF2 115 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 FRMD6-AS1P0C7T7 363 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 ZNF688P0C7X2 276 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 IGHV4-30-4P0DP06 118 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 ZNF80P51504 273 aaPredicted RBP12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 FABP9Q0Z7S8 132 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 GTSF1Q8WW33 167 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 CLUHP3Q96NS8 147 aa12.15□□□□□ -0.46
PDLIM1-201ENST00000329399 SNURFLB1AK76 121 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BKO60814 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 ORM1P02763 201 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BJP06899 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 GPX1P07203 203 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 TRGC1P0CF51 173 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BOP23527 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BBP33778 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BDP58876 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BCP62807 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST2H2BEQ16778 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 TMEM136Q6ZRR5 245 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 ZFAND2AQ8N6M9 145 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 FRZBQ92765 325 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BHQ93079 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BNQ99877 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 HIST1H2BMQ99879 126 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 FAM110AQ9BQ89 295 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 DNAH7Q8WXX0 4024 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 LOC105371267A0A1B0GV96 52 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 A8MTW9 85 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 KLLNB2CW77 178 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 TFPI2P48307 235 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 ZFP82Q8N141 532 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 PGLYRP4Q96LB8 373 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 MRPL18Q9H0U6 180 aaKnown RBP12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 C19orf73Q9NVV2 129 aa12.14□□□□□ -0.47
PDLIM1-201ENST00000329399 C5orf52A6NGY3 159 aa12.13□□□□□ -0.47
PDLIM1-201ENST00000329399 MRPL54Q6P161 138 aaKnown RBP12.13□□□□□ -0.47
PDLIM1-201ENST00000329399 GATD1Q8NB37 220 aa12.13□□□□□ -0.47
PDLIM1-201ENST00000329399 IGLC6P0CF74 106 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 CTRLP40313 264 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 COA6Q5JTJ3 125 aaKnown RBP12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 DNLZQ5SXM8 178 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 DEFB125Q8N687 156 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 FER1L6-AS1Q8NA97 138 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 KCNS1Q96KK3 526 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 CNFNQ9BYD5 112 aa12.12□□□□□ -0.47
PDLIM1-201ENST00000329399 APCSP02743 223 aa12.11□□□□□ -0.47
PDLIM1-201ENST00000329399 MED14OSP0DP75 135 aa12.11□□□□□ -0.47
PDLIM1-201ENST00000329399 HLA-DRB4P13762 266 aa12.11□□□□□ -0.47
PDLIM1-201ENST00000329399 RAB4BP61018 213 aa12.11□□□□□ -0.47
PDLIM1-201ENST00000329399 HLA-DRB4X5D2U9 266 aa12.11□□□□□ -0.47
PDLIM1-201ENST00000329399 UBE2CO00762 179 aa12.1□□□□□ -0.47
PDLIM1-201ENST00000329399 ZNF705DP0CH99 300 aaPredicted RBP12.1□□□□□ -0.47
PDLIM1-201ENST00000329399 ZNF705BP0CI00 300 aaPredicted RBP12.1□□□□□ -0.47
PDLIM1-201ENST00000329399 CDKN1BP46527 198 aa12.1□□□□□ -0.47
PDLIM1-201ENST00000329399 F6UB75 175 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 SPINK4O60575 86 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 AMBPP02760 352 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 OR5AL1P0C617 328 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 HOXA5P20719 270 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 CACNG7P62955 275 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 ZNF493Q6ZR52 646 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 GTSCR1Q86UQ5 136 aa12.09□□□□□ -0.47
PDLIM1-201ENST00000329399 IGKV3D-20A0A0C4DH25 116 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 RBMY1BA6NDE4 496 aaKnown RBP12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 RBMY1EA6NEQ0 496 aaKnown RBP12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 A8MZ25 164 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 RBMY1DP0C7P1 496 aaKnown RBP12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 GZMBP10144 247 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 NDUFA6P56556 154 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 DEFB131AP59861 70 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 SNRPEP62304 92 aaKnown RBP12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 DMRTA1Q5VZB9 504 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 LYZL1Q6UWQ5 148 aa12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 SSBP4Q9BWG4 385 aaPredicted RBP12.08□□□□□ -0.47
PDLIM1-201ENST00000329399 C7orf71A4D174 169 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 OR11H12B2RN74 326 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 H3BMM0 161 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 RNASE4P34096 147 aaKnown RBP12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 CAMPP49913 170 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 Q0VG73 95 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 TDRG1Q3Y452 100 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 OR10J3Q5JRS4 329 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 C20orf144Q9BQM9 153 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 MAP6D1Q9H9H5 199 aa12.08□□□□□ -0.48
PDLIM1-201ENST00000329399 IGHV4-4A0A075B6R2 117 aa12.07□□□□□ -0.48
PDLIM1-201ENST00000329399 SNAI2O43623 268 aa12.07□□□□□ -0.48
PDLIM1-201ENST00000329399 PRB4P10163 310 aaPredicted RBP12.07□□□□□ -0.48
PDLIM1-201ENST00000329399 TMSB15BA0A087X1C1 80 aa12.06□□□□□ -0.48
PDLIM1-201ENST00000329399 ARMS2P0C7Q2 107 aa12.06□□□□□ -0.48
PDLIM1-201ENST00000329399 NHLRC4P0CG21 123 aaPredicted RBP12.06□□□□□ -0.48
PDLIM1-201ENST00000329399 ASIPP42127 132 aa12.06□□□□□ -0.48
PDLIM1-201ENST00000329399 FAM159AQ6UWV7 190 aa12.06□□□□□ -0.48
PDLIM1-201ENST00000329399 PRR9Q5T870 116 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 GDF5OSQ5U4N7 250 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 AMTNQ6UX39 209 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 SMIM15Q7Z3B0 74 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 ZNF575Q86XF7 245 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms