RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 IGKV3-20P01619 116 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 CEP350Q5VT06 3117 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 TMEM200BQ69YZ2 307 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 C17orf100A8MU93 164 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 THBDP07204 575 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 ASPHD1Q5U4P2 390 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 IGKV1D-17A0A075B6S4 117 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 TIMM23O14925 209 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 TFF1P04155 84 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 IGHV1-8P0DP01 117 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 FASNP49327 2511 aaKnown RBP5.63□□□□□ -1.51
SMC1A-201ENST00000322213 RBAKDNA6NC62 111 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 RBMY1FQ15415 496 aaKnown RBP5.63□□□□□ -1.51
SMC1A-201ENST00000322213 LINC00158P58513 81 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 LINC00205P59089 165 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PRR25Q96S07 402 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 IGHV1-3A0A0C4DH29 117 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PAX4O43316 350 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 CCL3L1P16619 93 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 C9orf139Q6ZV77 190 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 E9PLD3 99 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 CFC1BP0CG36 223 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 CFC1P0CG37 223 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 LINC00173Q6ZV60 143 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 CFAP54Q96N23 3096 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 ATP5J2P56134 94 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 TRIP6Q15654 476 aaKnown RBP5.63□□□□□ -1.51
SMC1A-201ENST00000322213 TRAV26-2A0A0B4J265 109 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PRR20EP86478 221 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PRR20CP86479 221 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PRR20DP86480 221 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PRR20BP86481 221 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 PRR20AP86496 221 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 Q6ZS92 163 aa5.63□□□□□ -1.51
SMC1A-201ENST00000322213 FAM201AQ5SY85 155 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 CHCHD5Q9BSY4 110 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 TMEM243Q9BU79 118 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 TRAV12-1A0A0B4J245 112 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 H3BRN7 92 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 PIFOQ8TCI5 191 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 DSCR8Q96T75 97 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 TRAV25A0A0B4J276 109 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 NTN3O00634 580 aaPredicted RBP5.62□□□□□ -1.51
SMC1A-201ENST00000322213 A0A1B0GX51 115 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 BUB1B-PAK6H3BSN5 160 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 RHOHQ15669 191 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 C10orf55Q5SWW7 151 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 IGFBPL1Q8WX77 278 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 SYNJ2BPP57105 145 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 NTN5Q8WTR8 489 aaPredicted RBP5.62□□□□□ -1.51
SMC1A-201ENST00000322213 FAM120AOSQ5T036 256 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 PRIMA1Q86XR5 153 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 MAFAQ8NHW3 353 aaPredicted RBP5.62□□□□□ -1.51
SMC1A-201ENST00000322213 METRNQ9UJH8 293 aa5.62□□□□□ -1.51
SMC1A-201ENST00000322213 RHODO00212 210 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 COL4A2P08572 1712 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 GCN1Q92616 2671 aaKnown RBP5.61□□□□□ -1.51
SMC1A-201ENST00000322213 IGHV3OR16-12A0A075B7B8 117 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 A0A0B4J2C4 111 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 FAM223BA6NKX1 122 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 ADARB2-AS1A8MUL3 147 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 RBM3P98179 157 aaKnown RBP5.61□□□□□ -1.51
SMC1A-201ENST00000322213 FAM223AQ8IWN6 122 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 TM2D2Q9BX73 214 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 IGHV1-18A0A0C4DH31 117 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 C15orf65H3BRN8 121 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 LYPD6Q86Y78 171 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 DUSP14O95147 198 aaKnown RBP5.61□□□□□ -1.51
SMC1A-201ENST00000322213 GATA4P43694 442 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 CRIPAKQ8N1N5 446 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 ORMDL1Q9P0S3 153 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 VPREB3Q9UKI3 123 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 ZFHX2Q9C0A1 2572 aaPredicted RBP5.61□□□□□ -1.51
SMC1A-201ENST00000322213 Q71RC1 249 aaPredicted RBP5.61□□□□□ -1.51
SMC1A-201ENST00000322213 LINC01587Q99440 93 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 A0A1B0GXF2 115 aa5.61□□□□□ -1.51
SMC1A-201ENST00000322213 H3BT86 120 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 NDUFA11Q86Y39 141 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 C3orf22Q8N5N4 141 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 JPT2Q9H910 190 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 SPRR3Q9UBC9 169 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 NDUFA12Q9UI09 145 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 TCL1BO95988 128 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 PRR30Q53SZ7 412 aaPredicted RBP5.6□□□□□ -1.51
SMC1A-201ENST00000322213 GAFA1Q96PS6 74 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 A0A087WWL8 130 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 A0A0U1RRA0 63 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 CCDC179H3BU77 68 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 EFNA4P52798 201 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 HERVK_113P63121 156 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 K7EM74 188 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 KRTAP27-1Q3LI81 207 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 KNCNA6PVL3 124 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 F5H768 121 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 B3GALT5-AS1P59052 145 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 NBEAQ8NFP9 2946 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 TEX49A0A1B0GTD5 131 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 IGLV2-14P01704 120 aa5.6□□□□□ -1.51
SMC1A-201ENST00000322213 LTBRP36941 435 aa5.59□□□□□ -1.51
SMC1A-201ENST00000322213 LRRC75A-AS1Q8N1F1 130 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms