RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 PRR27Q6MZM9 219 aa12.98□□□□□ -0.33
PHGDH-234ENST00000642041 SIGLEC8Q9NYZ4 499 aa12.98□□□□□ -0.33
PHGDH-234ENST00000642041 TRAPPC1Q9Y5R8 145 aa12.98□□□□□ -0.33
PHGDH-234ENST00000642041 IGHV4OR15-8A0A075B7B6 117 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 IGHV3OR16-8A0A075B7F1 116 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 A0A087WW49 117 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 TRAV25A0A0B4J276 109 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 LCE6AA0A183 80 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 CBLN1P23435 193 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 KRTAP10-11P60412 298 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 KHDC1LQ5JSQ8 128 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 RBPMS2Q6ZRY4 209 aaKnown RBP12.97□□□□□ -0.33
PHGDH-234ENST00000642041 NDUFA11Q86Y39 141 aa12.97□□□□□ -0.33
PHGDH-234ENST00000642041 IGHV3-66A0A0C4DH42 116 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 TMEM213A2RRL7 107 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 SOCS3O14543 225 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 TRGC2P03986 189 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 LCNL1Q6ZST4 164 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 ZNF738Q8NE65 137 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 OR11H1Q8NG94 326 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 ODF3Q96PU9 254 aa12.96□□□□□ -0.33
PHGDH-234ENST00000642041 TRAV8-2A0A0B4J237 113 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 C2orf70A6NJV1 201 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 DUSP14O95147 198 aaKnown RBP12.95□□□□□ -0.34
PHGDH-234ENST00000642041 SYNJ2BPP57105 145 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 ACTL10Q5JWF8 245 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 KLHL30-AS1Q8NEE0 82 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 OR2D3Q8NGH3 330 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 OR9G4Q8NGQ1 327 aa12.95□□□□□ -0.34
PHGDH-234ENST00000642041 TRAV8-1A0A0A6YYK1 113 aa12.94□□□□□ -0.34
PHGDH-234ENST00000642041 TMEM189A5PLL7 270 aa12.94□□□□□ -0.34
PHGDH-234ENST00000642041 ADARB2-AS1A8MUL3 147 aa12.94□□□□□ -0.34
PHGDH-234ENST00000642041 RIGQ13278 110 aa12.94□□□□□ -0.34
PHGDH-234ENST00000642041 NHLRC2Q8NBF2 726 aa12.94□□□□□ -0.34
PHGDH-234ENST00000642041 IGHV3OR16-13A0A075B7E8 117 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 IGHV3-49A0A0A0MS15 119 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 IGHV3-74A0A0B4J1X5 117 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 HIGD1CA8MV81 97 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 F2Z2F3 143 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 CD28P10747 220 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 DMRTA1Q5VZB9 504 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 ZC2HC1AQ96GY0 325 aa12.93□□□□□ -0.34
PHGDH-234ENST00000642041 IGKV2-40A0A087WW87 121 aaPredicted RBP12.92□□□□□ -0.34
PHGDH-234ENST00000642041 IGKV2D-40P01614 121 aaPredicted RBP12.92□□□□□ -0.34
PHGDH-234ENST00000642041 EGFEM1PQ0D2K5 195 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 TCTEX1D4Q5JR98 221 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 NUP35Q8NFH5 326 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 MUC7Q8TAX7 377 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 DCANP1Q8TF63 244 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 SGK494Q96LW2 274 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 NEU1Q99519 415 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 AGPAT4-IT1Q9H0P7 198 aa12.92□□□□□ -0.34
PHGDH-234ENST00000642041 LOC105371267A0A1B0GV96 52 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 C5orf52A6NGY3 159 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 TSPOP30536 169 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 FHL3Q13643 280 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 EBLN2Q6P2I7 272 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 OR8A1Q8NGG7 326 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 OR2K2Q8NGT1 345 aa12.91□□□□□ -0.34
PHGDH-234ENST00000642041 CITED2Q99967 270 aaPredicted RBP12.91□□□□□ -0.34
PHGDH-234ENST00000642041 A0A1B0GUT8 65 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 SNURFLB1AK76 121 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 K7EQG2 157 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 TRGC1P0CF51 173 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 CRISP2P16562 243 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 HBBP68871 147 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 LINC01559Q495D7 138 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 COA6Q5JTJ3 125 aaKnown RBP12.9□□□□□ -0.34
PHGDH-234ENST00000642041 DYNLRB2Q8TF09 96 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 FRZBQ92765 325 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 VGLL1Q99990 258 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 MS4A6AQ9H2W1 248 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 HERC2O95714 4834 aa12.9□□□□□ -0.34
PHGDH-234ENST00000642041 TRAV21A0A0B4J279 112 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 ZNF705FA8MVS1 300 aaPredicted RBP12.89□□□□□ -0.35
PHGDH-234ENST00000642041 CCL24O00175 119 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 UBE2CO00762 179 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BKO60814 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 SH2D1AO60880 128 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BJP06899 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BOP23527 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BBP33778 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 LEPP41159 167 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BDP58876 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BCP62807 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 FABP9Q0Z7S8 132 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST2H2BEQ16778 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.89□□□□□ -0.35
PHGDH-234ENST00000642041 RNF182Q8N6D2 247 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BHQ93079 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BNQ99877 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HIST1H2BMQ99879 126 aa12.89□□□□□ -0.35
PHGDH-234ENST00000642041 SPAG8Q99932 426 aaPredicted RBP12.89□□□□□ -0.35
PHGDH-234ENST00000642041 HUWE1Q7Z6Z7 4374 aaKnown RBP12.88□□□□□ -0.35
PHGDH-234ENST00000642041 OR4C46A6NHA9 309 aa12.88□□□□□ -0.35
PHGDH-234ENST00000642041 HOXA5P20719 270 aa12.88□□□□□ -0.35
PHGDH-234ENST00000642041 APRG1Q8IVJ8 170 aa12.88□□□□□ -0.35
PHGDH-234ENST00000642041 MRPL18Q9H0U6 180 aaKnown RBP12.88□□□□□ -0.35
PHGDH-234ENST00000642041 PCLOQ9Y6V0 5065 aa12.87□□□□□ -0.35
PHGDH-234ENST00000642041 PHOX2AO14813 284 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms