RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 BVES-AS1Q5T3Y7 98 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 NDUFA11Q86Y39 141 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ETDCA0A1B0GVM5 59 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 COA6Q5JTJ3 125 aaKnown RBP2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PPP1R32Q7Z5V6 425 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 LYPD1Q8N2G4 141 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 KLF14Q8TD94 323 aaPredicted RBP2.28□□□□□ -2.04
SCN1A-219ENST00000641575 A8MWP6 167 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM254Q8TBM7 123 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-64A0A075B6Q5 118 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PRE2 83 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 RS1O15537 224 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 CFPP27918 469 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 STPG4Q8N801 248 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 FLNCQ14315 2725 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 FAM240AA0A1B0GVK7 77 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1B0GW64 132 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 H3BUX3 64 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PRR4Q16378 134 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00337Q8N6G1 96 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 WFDC12Q8WWY7 111 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 C5orf66Q9H5L9 145 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV1D-42A0A075B6H8 117 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 ANGP03950 147 aaKnown RBP2.28□□□□□ -2.04
SCN1A-219ENST00000641575 DEFB130BP0DP73 79 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 DEFB130AP0DP74 79 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 C15orf32Q32M92 178 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 C11orf45Q8TAV5 145 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 FBXL7Q9UJT9 491 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV12-2A0A075B6T6 113 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV6D-41A0A0C4DH26 115 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV1D-12P01611 117 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 ETDBQ3ZM63 59 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 RPRMLQ8N4K4 120 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PIP4P2Q8N4L2 257 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 LINC01560Q8TB33 94 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 C20orf144Q9BQM9 153 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PYGO2Q9BRQ0 406 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 LY96Q9Y6Y9 160 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PPM0 123 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PPV9 198 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 NDUFC2-KCTD14E9PQ53 114 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 XCL1P47992 114 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PYY3Q5JQD4 70 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 SPATA12Q7Z6I5 190 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 Q9H3A6 140 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 CRYBG3Q68DQ2 2970 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PRB1P04280 392 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 PDE6GP18545 87 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 SLURP1P55000 103 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 SNURFQ9Y675 71 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV25A0A0B4J276 109 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 CCL4P13236 92 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 IGFBP3P17936 291 aaPredicted RBP2.28□□□□□ -2.04
SCN1A-219ENST00000641575 FBLN5Q9UBX5 448 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 VPREB3Q9UKI3 123 aa2.28□□□□□ -2.04
SCN1A-219ENST00000641575 IGLV3-10A0A075B6K4 115 aa2.28□□□□□ -2.05
SCN1A-219ENST00000641575 VSIG8P0DPA2 414 aa2.28□□□□□ -2.05
SCN1A-219ENST00000641575 FOXG1P55316 489 aaPredicted RBP2.28□□□□□ -2.05
SCN1A-219ENST00000641575 TFF3Q07654 80 aa2.28□□□□□ -2.05
SCN1A-219ENST00000641575 A0A1B0GX51 115 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 D6R8Y8 96 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 RPL18AQ02543 176 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 MORN5Q5VZ52 161 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 MUSTN1Q8IVN3 82 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 CCL24O00175 119 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 NBEAP1P0C6P0 100 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 PRR31Q5SQ13 230 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 TIMM17AQ99595 171 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 TRAV13-2A0A0B4J235 113 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 K7ERJ3 54 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 ATP5EP2Q5VTU8 51 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 LINC00311Q8N616 119 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 RNASE7Q9H1E1 156 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 ANKRD39Q53RE8 183 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF493Q6ZR52 646 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 PRSS41Q7RTY9 318 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 CSDC2Q9Y534 153 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 TRANK1O15050 2925 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 IGKV6-21A0A0C4DH24 114 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 K7EMI3 77 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF672Q499Z4 452 aaPredicted RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 PRIMA1Q86XR5 153 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 ITLN1Q8WWA0 313 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV1-24A0A0C4DH33 117 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 A0A0U1RRA0 63 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 UBE2D2P62837 147 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 DAZ2Q13117 558 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 DAZ4Q86SG3 579 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 LY6G5BQ8NDX9 201 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 C16orf74Q96GX8 76 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 LIME1Q9H400 295 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 DAZ3Q9NR90 486 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 SIGLEC8Q9NYZ4 499 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 LSM4Q9Y4Z0 139 aaKnown RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 YPEL3P61236 119 aaPredicted RBP2.27□□□□□ -2.05
SCN1A-219ENST00000641575 P0C879 139 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 GP9P14770 177 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 MRGPRG-AS1Q2M3A8 158 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 LIMD2Q9BT23 127 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms