RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NEGR1Q7Z3B1 354 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 PFDN5Q99471 154 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 SLC39A9Q9NUM3 307 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 OR5AC2Q9NZP5 309 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 MSRB1Q9NZV6 116 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 E5RGE8 158 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 FAM229AH3BQW9 127 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 NDUFB4O95168 129 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 FGF7P21781 194 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 ATP6V1FQ16864 119 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 LRRC37A5PQ49AS3 106 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 WFDC10BQ8IUB3 73 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 EXOC3-AS1Q8N2X6 119 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 CHAC2Q8WUX2 184 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 VGLL1Q99990 258 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 PRELID1Q9Y255 219 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 TIMM9Q9Y5J7 89 aa13.14□□□□□ -0.31
CLN3-262ENST00000637699 DEFA1P59665 94 aa13.13□□□□□ -0.31
CLN3-262ENST00000637699 DEFA3P59666 94 aa13.13□□□□□ -0.31
CLN3-262ENST00000637699 PRR9Q5T870 116 aa13.13□□□□□ -0.31
CLN3-262ENST00000637699 BLNKQ8WV28 456 aa13.13□□□□□ -0.31
CLN3-262ENST00000637699 ARPC5LQ9BPX5 153 aa13.13□□□□□ -0.31
CLN3-262ENST00000637699 IGHV1OR15-1A0A075B7D0 117 aa13.12□□□□□ -0.31
CLN3-262ENST00000637699 IGKV2-40A0A087WW87 121 aaPredicted RBP13.12□□□□□ -0.31
CLN3-262ENST00000637699 IGKV2D-40P01614 121 aaPredicted RBP13.12□□□□□ -0.31
CLN3-262ENST00000637699 PYYP10082 97 aa13.12□□□□□ -0.31
CLN3-262ENST00000637699 HIST1H1EP10412 219 aaKnown RBP13.12□□□□□ -0.31
CLN3-262ENST00000637699 CRISP2P16562 243 aa13.12□□□□□ -0.31
CLN3-262ENST00000637699 EVI2AP22794 236 aa13.12□□□□□ -0.31
CLN3-262ENST00000637699 ZFAND2AQ8N6M9 145 aa13.12□□□□□ -0.31
CLN3-262ENST00000637699 OR5C1Q8NGR4 320 aa13.12□□□□□ -0.31
CLN3-262ENST00000637699 TRGV4A0A0C4DH28 118 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 CYCSP99999 105 aaKnown RBP13.11□□□□□ -0.31
CLN3-262ENST00000637699 TMEM78Q5T7P6 136 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 C9orf47Q6ZRZ4 202 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 THAP6Q8TBB0 222 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 NPCDR1Q9BY65 106 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 MRPL32Q9BYC8 188 aaKnown RBP13.11□□□□□ -0.31
CLN3-262ENST00000637699 SLC25A31Q9H0C2 315 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 TMEM14CQ9P0S9 112 aa13.11□□□□□ -0.31
CLN3-262ENST00000637699 K7EQD1 137 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 SSNA1O43805 119 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 NMBP08949 121 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 SRIP30626 198 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 GCSAMLQ5JQS6 135 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 FAM122CQ6P4D5 195 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 PPP1R1CQ8WVI7 109 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 AAMDCQ9H7C9 122 aa13.1□□□□□ -0.31
CLN3-262ENST00000637699 SFTA3P0C7M3 94 aa13.09□□□□□ -0.31
CLN3-262ENST00000637699 ZNF415Q09FC8 603 aa13.09□□□□□ -0.31
CLN3-262ENST00000637699 PDE6HQ13956 83 aa13.09□□□□□ -0.31
CLN3-262ENST00000637699 Q6ZSN1 163 aa13.09□□□□□ -0.31
CLN3-262ENST00000637699 DNAH8Q96JB1 4490 aa13.08□□□□□ -0.32
CLN3-262ENST00000637699 IGLV5-52A0A0A0MRZ9 124 aa13.08□□□□□ -0.32
CLN3-262ENST00000637699 K7EP13 123 aa13.08□□□□□ -0.32
CLN3-262ENST00000637699 GYPEP15421 78 aa13.08□□□□□ -0.32
CLN3-262ENST00000637699 PCNPQ8WW12 178 aaKnown RBP13.08□□□□□ -0.32
CLN3-262ENST00000637699 ZNF479Q96JC4 524 aa13.08□□□□□ -0.32
CLN3-262ENST00000637699 ZNF492Q9P255 531 aa13.08□□□□□ -0.32
CLN3-262ENST00000637699 MPC2O95563 127 aa13.07□□□□□ -0.32
CLN3-262ENST00000637699 CRYGDP07320 174 aa13.07□□□□□ -0.32
CLN3-262ENST00000637699 MUC21Q5SSG8 566 aa13.07□□□□□ -0.32
CLN3-262ENST00000637699 J3QL48 77 aa13.06□□□□□ -0.32
CLN3-262ENST00000637699 Q8TAT8 98 aa13.06□□□□□ -0.32
CLN3-262ENST00000637699 SLC25A2Q9BXI2 301 aa13.06□□□□□ -0.32
CLN3-262ENST00000637699 WDR61Q9GZS3 305 aaKnown RBP13.06□□□□□ -0.32
CLN3-262ENST00000637699 PSCAO43653 123 aa13.05□□□□□ -0.32
CLN3-262ENST00000637699 ZNF138P52744 262 aa13.05□□□□□ -0.32
CLN3-262ENST00000637699 IQCF2Q8IXL9 164 aa13.05□□□□□ -0.32
CLN3-262ENST00000637699 FAM167A-AS1Q96KT0 104 aa13.05□□□□□ -0.32
CLN3-262ENST00000637699 ORM1P02763 201 aa13.04□□□□□ -0.32
CLN3-262ENST00000637699 MIR17HGQ75NE6 70 aa13.04□□□□□ -0.32
CLN3-262ENST00000637699 C10orf126Q8N4M7 172 aa13.04□□□□□ -0.32
CLN3-262ENST00000637699 OR10G4Q8NGN3 311 aa13.04□□□□□ -0.32
CLN3-262ENST00000637699 TMEM70Q9BUB7 260 aa13.04□□□□□ -0.32
CLN3-262ENST00000637699 NBEAP1P0C6P0 100 aa13.03□□□□□ -0.32
CLN3-262ENST00000637699 TXNDC17Q9BRA2 123 aa13.03□□□□□ -0.32
CLN3-262ENST00000637699 HSPB11Q9Y547 144 aa13.03□□□□□ -0.32
CLN3-262ENST00000637699 ALG5Q9Y673 324 aa13.03□□□□□ -0.32
CLN3-262ENST00000637699 LRCOL1A6NCL2 159 aa13.02□□□□□ -0.33
CLN3-262ENST00000637699 RPL12P30050 165 aaKnown RBP13.02□□□□□ -0.33
CLN3-262ENST00000637699 TMEM183BQ1AE95 376 aa13.02□□□□□ -0.33
CLN3-262ENST00000637699 TMEM183AQ8IXX5 376 aa13.02□□□□□ -0.33
CLN3-262ENST00000637699 RASL10AQ92737 203 aa13.02□□□□□ -0.33
CLN3-262ENST00000637699 ATP5SQ99766 215 aa13.02□□□□□ -0.33
CLN3-262ENST00000637699 MBD2Q9UBB5 411 aa13.02□□□□□ -0.33
CLN3-262ENST00000637699 LOC100131303A0A0U1RQF7 123 aa13.01□□□□□ -0.33
CLN3-262ENST00000637699 C9JCJ5 164 aa13.01□□□□□ -0.33
CLN3-262ENST00000637699 OR10J4P0C629 311 aa13.01□□□□□ -0.33
CLN3-262ENST00000637699 PET100P0DJ07 73 aa13.01□□□□□ -0.33
CLN3-262ENST00000637699 NTN5Q8WTR8 489 aaPredicted RBP13.01□□□□□ -0.33
CLN3-262ENST00000637699 SMIM3Q9BZL3 60 aa13.01□□□□□ -0.33
CLN3-262ENST00000637699 OR51M1Q9H341 326 aa13.01□□□□□ -0.33
CLN3-262ENST00000637699 ZNF266Q14584 549 aa13□□□□□ -0.33
CLN3-262ENST00000637699 PHYHIPLQ96FC7 376 aa13□□□□□ -0.33
CLN3-262ENST00000637699 SPXQ9BT56 116 aa13□□□□□ -0.33
CLN3-262ENST00000637699 WFDC1Q9HC57 220 aa13□□□□□ -0.33
CLN3-262ENST00000637699 FAM30AQ9NZY2 134 aa13□□□□□ -0.33
CLN3-262ENST00000637699 IGHV3-38A0A0C4DH36 116 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 TRBV7-9A0A0J9YWB2 115 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms