RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF705GA8MUZ8 300 aaPredicted RBP13.04□□□□□ -0.32
CLN3-259ENST00000637551 SUMO1P63165 101 aaKnown RBP13.04□□□□□ -0.32
CLN3-259ENST00000637551 DAZ2Q13117 558 aaKnown RBP13.04□□□□□ -0.32
CLN3-259ENST00000637551 KIR3DS1Q14943 382 aa13.04□□□□□ -0.32
CLN3-259ENST00000637551 Q6ZTC4 211 aa13.04□□□□□ -0.32
CLN3-259ENST00000637551 GOLT1AQ6ZVE7 132 aa13.04□□□□□ -0.32
CLN3-259ENST00000637551 EIF4E3Q8N5X7 224 aaKnown RBP13.04□□□□□ -0.32
CLN3-259ENST00000637551 FAM74A7A6NL05 159 aa13.03□□□□□ -0.32
CLN3-259ENST00000637551 EIF3GO75821 320 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLN3-259ENST00000637551 TDRG1Q3Y452 100 aa13.03□□□□□ -0.32
CLN3-259ENST00000637551 ZFP69Q49AA0 526 aa13.03□□□□□ -0.32
CLN3-259ENST00000637551 LINC00612Q8N6U2 182 aa13.03□□□□□ -0.32
CLN3-259ENST00000637551 TP53TG3Q9ULZ0 132 aa13.03□□□□□ -0.32
CLN3-259ENST00000637551 PCLOQ9Y6V0 5065 aa13.02□□□□□ -0.32
CLN3-259ENST00000637551 TEX46H3BTG2 121 aa13.02□□□□□ -0.33
CLN3-259ENST00000637551 CD300CQ08708 224 aa13.02□□□□□ -0.33
CLN3-259ENST00000637551 Q8TAT8 98 aa13.02□□□□□ -0.33
CLN3-259ENST00000637551 C18orf15Q96N68 181 aa13.02□□□□□ -0.33
CLN3-259ENST00000637551 HERC2O95714 4834 aa13.02□□□□□ -0.33
CLN3-259ENST00000637551 DEFB131BA0A096LNP1 70 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 SNURFLB1AK76 121 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 F6UZH7 168 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 RNASE4P34096 147 aaKnown RBP13.01□□□□□ -0.33
CLN3-259ENST00000637551 EMP1P54849 157 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 DAD1P61803 113 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 BTN1A1Q13410 526 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 SAPCD1Q5SSQ6 148 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 IQCF2Q8IXL9 164 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 C9orf62Q8N4C0 152 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 FAM213BQ8TBF2 198 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 TXNDC17Q9BRA2 123 aa13.01□□□□□ -0.33
CLN3-259ENST00000637551 hCG_2014768A0A024R1R8 64 aa13□□□□□ -0.33
CLN3-259ENST00000637551 IGHV1OR15-1A0A075B7D0 117 aa13□□□□□ -0.33
CLN3-259ENST00000637551 H2AFB1P0C5Y9 115 aa13□□□□□ -0.33
CLN3-259ENST00000637551 AZU1P20160 251 aa13□□□□□ -0.33
CLN3-259ENST00000637551 SULT1A2P50226 295 aa13□□□□□ -0.33
CLN3-259ENST00000637551 FLI1Q01543 452 aaPredicted RBP13□□□□□ -0.33
CLN3-259ENST00000637551 SFT2D1Q8WV19 159 aa13□□□□□ -0.33
CLN3-259ENST00000637551 TREM1Q9NP99 234 aa13□□□□□ -0.33
CLN3-259ENST00000637551 TRAV21A0A0B4J279 112 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 TRBV6-1A0A0K0K1D8 114 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 RGS13O14921 159 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 IGLV2-11P01706 119 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 PRB4P10163 310 aaPredicted RBP12.99□□□□□ -0.33
CLN3-259ENST00000637551 FGF8P55075 233 aaPredicted RBP12.99□□□□□ -0.33
CLN3-259ENST00000637551 TCL1AP56279 114 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 PRR9Q5T870 116 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 PLA2G2EQ9NZK7 142 aa12.99□□□□□ -0.33
CLN3-259ENST00000637551 CBY3A6NI87 242 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 J3KRW8 73 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 PEX7O00628 323 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 IFNA7P01567 189 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 GNG5P63218 68 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 LGALS9BQ3B8N2 356 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 COX8CQ7Z4L0 72 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 C11orf72Q8NBR9 251 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 KCNS1Q96KK3 526 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 TMPRSS5Q9H3S3 457 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 MANBALQ9NQG1 85 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 RPH3ALQ9UNE2 315 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 KLF12Q9Y4X4 402 aa12.98□□□□□ -0.33
CLN3-259ENST00000637551 TRGV11A0A075B6L2 103 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 TRAV8-1A0A0A6YYK1 113 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 S100A9P06702 114 aaKnown RBP12.97□□□□□ -0.33
CLN3-259ENST00000637551 HTN1P15515 57 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 LGALS9CQ6DKI2 356 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 LINC00476Q8WZB0 136 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 FMC1Q96HJ9 113 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 PSG8Q9UQ74 426 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 ZFP30Q9Y2G7 519 aa12.97□□□□□ -0.33
CLN3-259ENST00000637551 ATP5G1P05496 136 aa12.96□□□□□ -0.33
CLN3-259ENST00000637551 TAGLN2P37802 199 aaKnown RBP12.96□□□□□ -0.33
CLN3-259ENST00000637551 ATP5G3P48201 142 aa12.96□□□□□ -0.33
CLN3-259ENST00000637551 FAM159AQ6UWV7 190 aa12.96□□□□□ -0.33
CLN3-259ENST00000637551 NDUFAF3Q9BU61 184 aa12.96□□□□□ -0.33
CLN3-259ENST00000637551 NOP10Q9NPE3 64 aaKnown RBP12.96□□□□□ -0.33
CLN3-259ENST00000637551 IGHV4-4A0A075B6R2 117 aa12.95□□□□□ -0.34
CLN3-259ENST00000637551 PFN1P07737 140 aaKnown RBP12.95□□□□□ -0.34
CLN3-259ENST00000637551 UBE2G2P60604 165 aa12.95□□□□□ -0.34
CLN3-259ENST00000637551 ZNF415Q09FC8 603 aa12.95□□□□□ -0.34
CLN3-259ENST00000637551 SMUG1Q53HV7 270 aa12.95□□□□□ -0.34
CLN3-259ENST00000637551 TVP23CQ96ET8 276 aa12.95□□□□□ -0.34
CLN3-259ENST00000637551 SPXQ9BT56 116 aa12.95□□□□□ -0.34
CLN3-259ENST00000637551 IGLL5B9A064 214 aa12.94□□□□□ -0.34
CLN3-259ENST00000637551 PRM2P04554 102 aa12.94□□□□□ -0.34
CLN3-259ENST00000637551 C15orf53Q8NAA6 179 aa12.94□□□□□ -0.34
CLN3-259ENST00000637551 APLNQ9ULZ1 77 aa12.94□□□□□ -0.34
CLN3-259ENST00000637551 MUC4Q99102 2169 aa12.93□□□□□ -0.34
CLN3-259ENST00000637551 CST9LP1Q5W188 147 aa12.93□□□□□ -0.34
CLN3-259ENST00000637551 Q86TA4 180 aa12.93□□□□□ -0.34
CLN3-259ENST00000637551 A0A1B0GVG6 124 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 H3BNG1 76 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 SPINK4O60575 86 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 PAGE4O60829 102 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 DEFB130BP0DP73 79 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 DEFB130AP0DP74 79 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 UBE2G1P62253 170 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 TMEM183BQ1AE95 376 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 SDF2L1Q9HCN8 221 aa12.92□□□□□ -0.34
CLN3-259ENST00000637551 GSN-AS1Q9NRJ2 163 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 174.8 ms