RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 LY96Q9Y6Y9 160 aa15.1■□□□□ 0.01
CLN3-245ENST00000636172 K7EN84 100 aa15.09■□□□□ 0.01
CLN3-245ENST00000636172 TSPOP30536 169 aa15.09■□□□□ 0.01
CLN3-245ENST00000636172 CDKN1BP46527 198 aa15.09■□□□□ 0.01
CLN3-245ENST00000636172 SDF2L1Q9HCN8 221 aa15.09■□□□□ 0.01
CLN3-245ENST00000636172 KRBOX1C9JBD0 128 aa15.08■□□□□ 0.01
CLN3-245ENST00000636172 GPX1P07203 203 aa15.08■□□□□ 0.01
CLN3-245ENST00000636172 MGST1P10620 155 aaKnown RBP15.08■□□□□ 0.01
CLN3-245ENST00000636172 SMUG1Q53HV7 270 aa15.08■□□□□ 0.01
CLN3-245ENST00000636172 CARHSP1Q9Y2V2 147 aaKnown RBP15.08■□□□□ 0.01
CLN3-245ENST00000636172 TRAV12-2A0A075B6T6 113 aa15.07■□□□□ 0
CLN3-245ENST00000636172 LOC102724200A0A096LPH7 203 aaPredicted RBP15.07■□□□□ 0
CLN3-245ENST00000636172 CRXO43186 299 aaPredicted RBP15.07■□□□□ 0
CLN3-245ENST00000636172 GCGP01275 180 aa15.07■□□□□ 0
CLN3-245ENST00000636172 GIG44P09565 113 aaPredicted RBP15.07■□□□□ 0
CLN3-245ENST00000636172 ZNF80P51504 273 aaPredicted RBP15.07■□□□□ 0
CLN3-245ENST00000636172 NUTF2P61970 127 aaKnown RBP15.07■□□□□ 0
CLN3-245ENST00000636172 RPL23P62829 140 aaKnown RBP15.07■□□□□ 0
CLN3-245ENST00000636172 BTN1A1Q13410 526 aa15.07■□□□□ 0
CLN3-245ENST00000636172 A8MZ25 164 aa15.07■□□□□ 0
CLN3-245ENST00000636172 RNASE4P34096 147 aaKnown RBP15.07■□□□□ 0
CLN3-245ENST00000636172 CRIP1P50238 77 aa15.07■□□□□ 0
CLN3-245ENST00000636172 OR5I1Q13606 314 aa15.07■□□□□ 0
CLN3-245ENST00000636172 GFI1BQ5VTD9 330 aa15.07■□□□□ 0
CLN3-245ENST00000636172 MORN3Q6PF18 240 aaPredicted RBP15.07■□□□□ 0
CLN3-245ENST00000636172 ADIRFQ15847 76 aa15.06■□□□□ 0
CLN3-245ENST00000636172 PRR27Q6MZM9 219 aa15.06■□□□□ 0
CLN3-245ENST00000636172 LINC00322Q6ZN03 302 aaPredicted RBP15.06■□□□□ 0
CLN3-245ENST00000636172 XCL2Q9UBD3 114 aa15.06■□□□□ 0
CLN3-245ENST00000636172 C7orf71A4D174 169 aa15.05■□□□□ -0
CLN3-245ENST00000636172 K7EIL1 84 aa15.05■□□□□ -0
CLN3-245ENST00000636172 Q6ZQT7 251 aa15.05■□□□□ -0
CLN3-245ENST00000636172 CSTL1Q9H114 145 aa15.05■□□□□ -0
CLN3-245ENST00000636172 CA1P00915 261 aaPredicted RBP15.04■□□□□ -0
CLN3-245ENST00000636172 AMBPP02760 352 aa15.04■□□□□ -0
CLN3-245ENST00000636172 FAM162BQ5T6X4 162 aa15.04■□□□□ -0
CLN3-245ENST00000636172 TRAV12-3A0A0B4J271 114 aa15.03■□□□□ -0
CLN3-245ENST00000636172 KIR2DL5BA0A0G2JN68 375 aa15.03■□□□□ -0
CLN3-245ENST00000636172 KIR2DL5BA0A0G2JPC4 375 aa15.03■□□□□ -0
CLN3-245ENST00000636172 SH2D1AO60880 128 aa15.03■□□□□ -0
CLN3-245ENST00000636172 PFN1P07737 140 aaKnown RBP15.03■□□□□ -0
CLN3-245ENST00000636172 RBMY1A1P0DJD3 496 aaKnown RBP15.03■□□□□ -0
CLN3-245ENST00000636172 RBMY1CP0DJD4 496 aa15.03■□□□□ -0
CLN3-245ENST00000636172 RBMY1FQ15415 496 aaKnown RBP15.03■□□□□ -0
CLN3-245ENST00000636172 Q6AWC8 147 aa15.03■□□□□ -0
CLN3-245ENST00000636172 KIR2DL5AQ8N109 375 aa15.03■□□□□ -0
CLN3-245ENST00000636172 KIR2DL5BQ8NHK3 375 aa15.03■□□□□ -0
CLN3-245ENST00000636172 ISOC2Q96AB3 205 aa15.03■□□□□ -0
CLN3-245ENST00000636172 PNRC1Q12796 327 aaPredicted RBP15.02■□□□□ -0
CLN3-245ENST00000636172 BIN3Q9NQY0 253 aa15.02■□□□□ -0
CLN3-245ENST00000636172 C19orf71A6NCJ1 209 aa15.02□□□□□ -0.01
CLN3-245ENST00000636172 ZNF324O75467 553 aaPredicted RBP15.02□□□□□ -0.01
CLN3-245ENST00000636172 INSP01308 110 aa15.02□□□□□ -0.01
CLN3-245ENST00000636172 APOC3P02656 99 aa15.02□□□□□ -0.01
CLN3-245ENST00000636172 FRMD6-AS1P0C7T7 363 aa15.02□□□□□ -0.01
CLN3-245ENST00000636172 APOC4P55056 127 aa15.02□□□□□ -0.01
CLN3-245ENST00000636172 TRAV21A0A0B4J279 112 aa15.01□□□□□ -0.01
CLN3-245ENST00000636172 FABP5P3A8MUU1 101 aa15.01□□□□□ -0.01
CLN3-245ENST00000636172 ATP6V1G1O75348 118 aa15.01□□□□□ -0.01
CLN3-245ENST00000636172 CSNK1G2-AS1Q8NCQ2 148 aa15.01□□□□□ -0.01
CLN3-245ENST00000636172 C1QTNF4Q9BXJ3 329 aa15.01□□□□□ -0.01
CLN3-245ENST00000636172 RNASE7Q9H1E1 156 aaKnown RBP15.01□□□□□ -0.01
CLN3-245ENST00000636172 MEGF8Q7Z7M0 2845 aa15□□□□□ -0.01
CLN3-245ENST00000636172 C11orf21Q9P2W6 132 aa15□□□□□ -0.01
CLN3-245ENST00000636172 M0R036 132 aa14.99□□□□□ -0.01
CLN3-245ENST00000636172 C1orf158Q8N1D5 194 aa14.99□□□□□ -0.01
CLN3-245ENST00000636172 ERVFC1-1P60608 527 aa14.98□□□□□ -0.01
CLN3-245ENST00000636172 IBA57Q5T440 356 aaKnown RBP14.98□□□□□ -0.01
CLN3-245ENST00000636172 FAM231DQ6ZW35 169 aa14.98□□□□□ -0.01
CLN3-245ENST00000636172 NUDT10Q8NFP7 164 aa14.98□□□□□ -0.01
CLN3-245ENST00000636172 NUDT11Q96G61 164 aa14.98□□□□□ -0.01
CLN3-245ENST00000636172 SFRP2Q96HF1 295 aa14.98□□□□□ -0.01
CLN3-245ENST00000636172 C20orf144Q9BQM9 153 aa14.98□□□□□ -0.01
CLN3-245ENST00000636172 SVBPQ8N300 66 aa14.97□□□□□ -0.01
CLN3-245ENST00000636172 DAZAP1Q96EP5 407 aaKnown RBP14.97□□□□□ -0.01
CLN3-245ENST00000636172 P01737 135 aa14.97□□□□□ -0.01
CLN3-245ENST00000636172 MUC21Q5SSG8 566 aa14.97□□□□□ -0.01
CLN3-245ENST00000636172 CLRN3Q8NCR9 226 aa14.97□□□□□ -0.01
CLN3-245ENST00000636172 OSTCQ9NRP0 149 aa14.97□□□□□ -0.01
CLN3-245ENST00000636172 NAGKQ9UJ70 344 aa14.97□□□□□ -0.01
CLN3-245ENST00000636172 NBEAL2Q6ZNJ1 2754 aa14.96□□□□□ -0.01
CLN3-245ENST00000636172 UBE2CO00762 179 aa14.96□□□□□ -0.02
CLN3-245ENST00000636172 IGKV3D-20A0A0C4DH25 116 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 H7BYZ3 331 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 ORM1P02763 201 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 RPL19P84098 196 aaKnown RBP14.95□□□□□ -0.02
CLN3-245ENST00000636172 DEFB135Q30KP9 77 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 RNF212Q495C1 297 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 LINC01559Q495D7 138 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 DEFB121Q5J5C9 76 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 TMEM256Q8N2U0 113 aa14.95□□□□□ -0.02
CLN3-245ENST00000636172 IGHV3OR16-12A0A075B7B8 117 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 B4DEV8 164 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 ANXA2RQ3ZCQ2 193 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 C15orf54Q8N8G6 183 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 OR10G8Q8NGN5 311 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 LINC01587Q99440 93 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 TMEM208Q9BTX3 173 aa14.94□□□□□ -0.02
CLN3-245ENST00000636172 RPP21Q9H633 154 aaKnown RBP14.94□□□□□ -0.02
CLN3-245ENST00000636172 GOLT1BQ9Y3E0 138 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms