RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PRM2P04554 102 aa13□□□□□ -0.33
CLN3-239ENST00000628023 ATP5G3P48201 142 aa13□□□□□ -0.33
CLN3-239ENST00000628023 NANOS2P60321 138 aaKnown RBP13□□□□□ -0.33
CLN3-239ENST00000628023 PRR9Q5T870 116 aa13□□□□□ -0.33
CLN3-239ENST00000628023 PRNTQ86SH4 94 aa13□□□□□ -0.33
CLN3-239ENST00000628023 CCDC28AQ8IWP9 274 aa13□□□□□ -0.33
CLN3-239ENST00000628023 HIST1H2BAQ96A08 127 aa13□□□□□ -0.33
CLN3-239ENST00000628023 GNG13Q9P2W3 67 aa13□□□□□ -0.33
CLN3-239ENST00000628023 SACSQ9NZJ4 4579 aa13□□□□□ -0.33
CLN3-239ENST00000628023 TRAV1-1A0A0B4J248 108 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 FBLL1A6NHQ2 334 aaKnown RBP12.99□□□□□ -0.33
CLN3-239ENST00000628023 FLI1Q01543 452 aaPredicted RBP12.99□□□□□ -0.33
CLN3-239ENST00000628023 TMEM75Q8N9X5 138 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 C16orf74Q96GX8 76 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 PYGO2Q9BRQ0 406 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 TCEAL7Q9BRU2 100 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 TREM1Q9NP99 234 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 MANBALQ9NQG1 85 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 PSG8Q9UQ74 426 aa12.99□□□□□ -0.33
CLN3-239ENST00000628023 SPART-AS1P0CW21 52 aa12.98□□□□□ -0.33
CLN3-239ENST00000628023 CELA1Q9UNI1 258 aa12.98□□□□□ -0.33
CLN3-239ENST00000628023 TRAV34A0A0B4J273 112 aa12.97□□□□□ -0.33
CLN3-239ENST00000628023 TEX48A0A1B0GUV7 120 aa12.97□□□□□ -0.33
CLN3-239ENST00000628023 RGS13O14921 159 aa12.97□□□□□ -0.33
CLN3-239ENST00000628023 IFNA1P01562 189 aa12.97□□□□□ -0.33
CLN3-239ENST00000628023 AZU1P20160 251 aa12.97□□□□□ -0.33
CLN3-239ENST00000628023 TMEM263Q8WUH6 116 aaKnown RBP12.97□□□□□ -0.33
CLN3-239ENST00000628023 CBY3A6NI87 242 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 C11orf94C9JXX5 98 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 ZNF324O75467 553 aaPredicted RBP12.96□□□□□ -0.33
CLN3-239ENST00000628023 AKR1C3P42330 323 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 UBE2G1P62253 170 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 CCL20P78556 96 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 FAM222AQ5U5X8 452 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 ZNF493Q6ZR52 646 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 LINC00479Q96M42 142 aa12.96□□□□□ -0.33
CLN3-239ENST00000628023 NUPR2A6NF83 97 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 IGLV2-11P01706 119 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 BLOC1S1P78537 153 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 ZNF767PQ75MW2 155 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 EIF4E3Q8N5X7 224 aaKnown RBP12.95□□□□□ -0.34
CLN3-239ENST00000628023 TVP23CQ96ET8 276 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 DKK2Q9UBU2 259 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 NAGKQ9UJ70 344 aa12.95□□□□□ -0.34
CLN3-239ENST00000628023 DNAH1Q9P2D7 4330 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 IGHV1OR15-1A0A075B7D0 117 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 MUC21Q5SSG8 566 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 SAPCD1Q5SSQ6 148 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 Q6AWC8 147 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 Q86TA4 180 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 ZNF680Q8NEM1 530 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 RNASE8Q8TDE3 154 aaKnown RBP12.94□□□□□ -0.34
CLN3-239ENST00000628023 PHLDA1Q8WV24 401 aaPredicted RBP12.94□□□□□ -0.34
CLN3-239ENST00000628023 FMC1Q96HJ9 113 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 C8orf49Q96NF6 230 aa12.94□□□□□ -0.34
CLN3-239ENST00000628023 TRAV21A0A0B4J279 112 aa12.93□□□□□ -0.34
CLN3-239ENST00000628023 SCO2A0A1W2PP80 73 aa12.93□□□□□ -0.34
CLN3-239ENST00000628023 SNURFLB1AK76 121 aa12.93□□□□□ -0.34
CLN3-239ENST00000628023 SMUG1Q53HV7 270 aa12.93□□□□□ -0.34
CLN3-239ENST00000628023 Q6ZQT7 251 aa12.93□□□□□ -0.34
CLN3-239ENST00000628023 LINC00467Q9BRT7 94 aa12.93□□□□□ -0.34
CLN3-239ENST00000628023 LYRM9A8MSI8 78 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 LY6G6CO95867 125 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 GCGP01275 180 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 DAD1P61803 113 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 FAM159AQ6UWV7 190 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 Q6ZTC4 211 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 LINC00476Q8WZB0 136 aa12.92□□□□□ -0.34
CLN3-239ENST00000628023 KLK5Q9Y337 293 aaPredicted RBP12.92□□□□□ -0.34
CLN3-239ENST00000628023 TIMM8BQ9Y5J9 83 aaPredicted RBP12.92□□□□□ -0.34
CLN3-239ENST00000628023 PLAC8L1A1L4L8 177 aa12.91□□□□□ -0.34
CLN3-239ENST00000628023 BCL2P10415 239 aa12.91□□□□□ -0.34
CLN3-239ENST00000628023 C12orf74Q32Q52 190 aa12.91□□□□□ -0.34
CLN3-239ENST00000628023 ANXA2RQ3ZCQ2 193 aa12.91□□□□□ -0.34
CLN3-239ENST00000628023 TXNDC17Q9BRA2 123 aa12.91□□□□□ -0.34
CLN3-239ENST00000628023 NOP10Q9NPE3 64 aaKnown RBP12.91□□□□□ -0.34
CLN3-239ENST00000628023 S100A9P06702 114 aaKnown RBP12.9□□□□□ -0.34
CLN3-239ENST00000628023 TMEM183BQ1AE95 376 aa12.9□□□□□ -0.34
CLN3-239ENST00000628023 CEMP1Q6PRD7 247 aaPredicted RBP12.9□□□□□ -0.34
CLN3-239ENST00000628023 TRGV11A0A075B6L2 103 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 TRAV10A0A0B4J240 114 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 DEFB130BP0DP73 79 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 DEFB130AP0DP74 79 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 TAGLN2P37802 199 aaKnown RBP12.89□□□□□ -0.35
CLN3-239ENST00000628023 MEF2BQ02080 365 aaPredicted RBP12.89□□□□□ -0.35
CLN3-239ENST00000628023 ZNF415Q09FC8 603 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 C2CD4CQ8TF44 421 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 GSN-AS1Q9NRJ2 163 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 TP53TG3Q9ULZ0 132 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 ZFP30Q9Y2G7 519 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 KLF12Q9Y4X4 402 aa12.89□□□□□ -0.35
CLN3-239ENST00000628023 PDE6DO43924 150 aa12.88□□□□□ -0.35
CLN3-239ENST00000628023 PFN1P07737 140 aaKnown RBP12.88□□□□□ -0.35
CLN3-239ENST00000628023 HTN3P15516 51 aa12.88□□□□□ -0.35
CLN3-239ENST00000628023 ZNF80P51504 273 aaPredicted RBP12.88□□□□□ -0.35
CLN3-239ENST00000628023 IBA57Q5T440 356 aaKnown RBP12.88□□□□□ -0.35
CLN3-239ENST00000628023 TMEM183AQ8IXX5 376 aa12.88□□□□□ -0.35
CLN3-239ENST00000628023 SDF2L1Q9HCN8 221 aa12.88□□□□□ -0.35
CLN3-239ENST00000628023 VAX2Q9UIW0 290 aa12.88□□□□□ -0.35
CLN3-239ENST00000628023 DEFB131BA0A096LNP1 70 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms