RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 IGHV1-69DA0A0B4J2H0 117 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 NPYP01303 97 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 IGHV1-69P01742 117 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 C17orf77Q96MU5 243 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 PRADC1Q9BSG0 188 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 TIMM21Q9BVV7 248 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 TRAV26-2A0A0B4J265 109 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 CRPP02741 224 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 VGLL1Q99990 258 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 TLN2Q9Y4G6 2542 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 PRIMA1Q86XR5 153 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 IGHV2-70DA0A0C4DH43 119 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 INSP01308 110 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 Q8N8P6 123 aa11.12□□□□□ -0.63
CPSF1-212ENST00000616140 SETD2Q9BYW2 2564 aaPredicted RBP11.12□□□□□ -0.63
CPSF1-212ENST00000616140 SPRNQ5BIV9 151 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 ZNF625Q96I27 306 aaPredicted RBP11.11□□□□□ -0.63
CPSF1-212ENST00000616140 SLC25A16P16260 332 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 KIAA1671Q9BY89 1806 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 PLXNB3Q9ULL4 1909 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 K7EM74 188 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 NDUFS7O75251 213 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 GATD1Q8NB37 220 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 RASL10AQ92737 203 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 PYGO2Q9BRQ0 406 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 TANC1Q9C0D5 1861 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 SDHAF1A6NFY7 115 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 C2orf82Q6UX34 121 aa11.11□□□□□ -0.63
CPSF1-212ENST00000616140 RNF223E7ERA6 249 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 ADAMTSL5Q6ZMM2 481 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 LINC01356Q8N9X3 169 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 MRPL35Q9NZE8 188 aaKnown RBP11.1□□□□□ -0.63
CPSF1-212ENST00000616140 XCL2Q9UBD3 114 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 MED12LQ86YW9 2145 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 ANXA2RQ3ZCQ2 193 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 DTX2Q86UW9 622 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 KLK9Q9UKQ9 250 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 FRMPD3Q5JV73 1810 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 C6orf226Q5I0X4 101 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 COA6Q5JTJ3 125 aaKnown RBP11.1□□□□□ -0.63
CPSF1-212ENST00000616140 JPT2Q9H910 190 aa11.1□□□□□ -0.63
CPSF1-212ENST00000616140 NDUFS8O00217 210 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 HLA-DMBP28068 263 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 CMC4P56277 68 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-212ENST00000616140 OCIAD2Q56VL3 154 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 TRPT1Q86TN4 253 aaKnown RBP11.09□□□□□ -0.63
CPSF1-212ENST00000616140 CST9LQ9H4G1 147 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 PCDH15Q96QU1 1955 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 COX8AP10176 69 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 LGALS9BQ3B8N2 356 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 S100A7L2Q5SY68 101 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 LGALS9CQ6DKI2 356 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 MYMXA0A1B0GTQ4 84 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 C9JAW5 83 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 MAJINQ3KP22 176 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 NEGR1Q7Z3B1 354 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 DKK4Q9UBT3 224 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 ETDBQ3ZM63 59 aa11.09□□□□□ -0.63
CPSF1-212ENST00000616140 TRAV12-2A0A075B6T6 113 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 DEFB130BP0DP73 79 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 DEFB130AP0DP74 79 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 PCNX3Q9H6A9 2034 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 KRTAP27-1Q3LI81 207 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 FAM120AOSQ5T036 256 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 PIP4P1Q86T03 277 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 SMIM2Q9BVW6 85 aa11.08□□□□□ -0.64
CPSF1-212ENST00000616140 TRAV8-3A0A0A6YYJ7 113 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 GHRHP01286 108 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 LTAP01374 205 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 GRNP28799 593 aaKnown RBP11.07□□□□□ -0.64
CPSF1-212ENST00000616140 C1QTNF4Q9BXJ3 329 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 NDUFA4O00483 81 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 IGFBPL1Q8WX77 278 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 IGHV3-16A0A0C4DH30 117 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 MORN5Q5VZ52 161 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 C1orf122Q6ZSJ8 110 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 LHBP01229 141 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 PMVKQ15126 192 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 CEP295Q9C0D2 2601 aa11.07□□□□□ -0.64
CPSF1-212ENST00000616140 ZFAND6Q6FIF0 208 aa11.06□□□□□ -0.64
CPSF1-212ENST00000616140 KLF2Q9Y5W3 355 aaPredicted RBP11.06□□□□□ -0.64
CPSF1-212ENST00000616140 NUPR1O60356 82 aa11.06□□□□□ -0.64
CPSF1-212ENST00000616140 F8VRH5 84 aa11.06□□□□□ -0.64
CPSF1-212ENST00000616140 RHODO00212 210 aa11.06□□□□□ -0.64
CPSF1-212ENST00000616140 GATA3P23771 443 aa11.06□□□□□ -0.64
CPSF1-212ENST00000616140 IGHV1OR15-1A0A075B7D0 117 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 SHISA9B4DS77 424 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 IGKV1-17P01599 117 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 TCTEX1D4Q5JR98 221 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 AGPAT4-IT1Q9H0P7 198 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 C9orf118A6NHY6 69 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 EGR2P11161 476 aaPredicted RBP11.05□□□□□ -0.64
CPSF1-212ENST00000616140 CDKN1BP46527 198 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 BVES-AS1Q5T3Y7 98 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 ZNF747Q9BV97 191 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 DKK2Q9UBU2 259 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 COL4A3Q01955 1670 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 DYNAPQ8N1N2 210 aa11.05□□□□□ -0.64
CPSF1-212ENST00000616140 PATE2Q6UY27 113 aa11.04□□□□□ -0.64
CPSF1-212ENST00000616140 C8orf31Q8N9H6 132 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms