RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	NBDY	A0A0U1RRE5	68 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223		F5H768	121 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	MRPS12	O15235	138 aa	Known RBP	10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	OR7C2	O60412	319 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	ARL14EPL	P0DKL9	152 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	FAM3B	P58499	235 aa	Predicted RBP	10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	PLP1	P60201	277 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	CCL20	P78556	96 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	KIR3DS1	Q14943	382 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	SSX7	Q7RTT5	188 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	TXNDC17	Q9BRA2	123 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	ATG101	Q9BSB4	218 aa		10.26	□□□□□ -0.77
IRF3-223	ENST00000599223	NUDT3	O95989	172 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	SFTA3	P0C7M3	94 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	RPL7	P18124	248 aa	Known RBP	10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	PATE2	Q6UY27	113 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	MIR17HG	Q75NE6	70 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	LINC00305	Q7Z4B0	112 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	SUN5	Q8TC36	379 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	RXFP4	Q8TDU9	374 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	LINC00588	Q9Y4M8	146 aa		10.25	□□□□□ -0.77
IRF3-223	ENST00000599223	C16orf90	A8MZG2	172 aa		10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	NDUFS6	O75380	124 aa	Known RBP	10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	SNRPC	P09234	159 aa	Known RBP	10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	GCHFR	P30047	84 aa		10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	MEF2B	Q02080	365 aa	Predicted RBP	10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	RNASE8	Q8TDE3	154 aa	Known RBP	10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	TMEM37	Q8WXS4	190 aa		10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	LINC01587	Q99440	93 aa		10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	SEC11C	Q9BY50	192 aa		10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	KRTAP1-5	Q9BYS1	174 aa		10.24	□□□□□ -0.77
IRF3-223	ENST00000599223	APOC3	P02656	99 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	ATP5G1	P05496	136 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	HTN1	P15515	57 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	ATP5G3	P48201	142 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	TAS2R60	P59551	318 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	SRSF3	P84103	164 aa	Known RBP	10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	ICAM4	Q14773	271 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	PSG3	Q16557	428 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	MORN5	Q5VZ52	161 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	CST9LP1	Q5W188	147 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	C6orf223	Q8N319	242 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	RPUSD4	Q96CM3	377 aa	Known RBP	10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	C16orf74	Q96GX8	76 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	ARL2-SNX15	V9GYD0	113 aa		10.23	□□□□□ -0.77
IRF3-223	ENST00000599223	SLC17A3	O00476	420 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	PDE6D	O43924	150 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	EIF3G	O75821	320 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	CEBPG	P53567	150 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	UBE2L3	P68036	154 aa	Known RBP	10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	TMEM256	Q8N2U0	113 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	SVBP	Q8N300	66 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	PAXX	Q9BUH6	204 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	NKX6-2	Q9C056	277 aa	Predicted RBP	10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	OR51M1	Q9H341	326 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	TMPRSS5	Q9H3S3	457 aa		10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	NOP10	Q9NPE3	64 aa	Known RBP	10.22	□□□□□ -0.77
IRF3-223	ENST00000599223	CBY3	A6NI87	242 aa		10.21	□□□□□ -0.77
IRF3-223	ENST00000599223	PRAC2	D3DTV9	90 aa		10.21	□□□□□ -0.77
IRF3-223	ENST00000599223		F6UZH7	168 aa		10.21	□□□□□ -0.77
IRF3-223	ENST00000599223		H3BTX0	84 aa		10.21	□□□□□ -0.77
IRF3-223	ENST00000599223	PAGE4	O60829	102 aa		10.21	□□□□□ -0.77
IRF3-223	ENST00000599223	CCDC28A	Q8IWP9	274 aa		10.21	□□□□□ -0.77
IRF3-223	ENST00000599223	TMEM263	Q8WUH6	116 aa	Known RBP	10.21	□□□□□ -0.77
IRF3-223	ENST00000599223	ZNF331	Q9NQX6	463 aa	Predicted RBP	10.21	□□□□□ -0.77
IRF3-223	ENST00000599223	TMEM250	H0YL14	139 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	CDK2AP2	O75956	126 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	SNAPIN	O95295	136 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	SRP19	P09132	144 aa	Known RBP	10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	CDKN1B	P46527	198 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	UBE2G2	P60604	165 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	GFI1B	Q5VTD9	330 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	LINC00612	Q8N6U2	182 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	SLC25A2	Q9BXI2	301 aa		10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	CARHSP1	Q9Y2V2	147 aa	Known RBP	10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	10.2	□□□□□ -0.78
IRF3-223	ENST00000599223	HOXA5	P20719	270 aa		10.19	□□□□□ -0.78
IRF3-223	ENST00000599223	CCL18	P55774	89 aa		10.19	□□□□□ -0.78
IRF3-223	ENST00000599223	FAM74A3	Q4VXF1	159 aa		10.19	□□□□□ -0.78
IRF3-223	ENST00000599223	BPIFA4P	Q86YQ2	179 aa		10.19	□□□□□ -0.78
IRF3-223	ENST00000599223	PPP1R14D	Q9NXH3	145 aa		10.19	□□□□□ -0.78
IRF3-223	ENST00000599223	TRAV26-1	A0A087WT03	109 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	TRAV5	A0A0B4J249	113 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223		A0A1W2PRE2	83 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223		H7BYZ3	331 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	OR10J4	P0C629	311 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	IGLC2	P0DOY2	106 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	C10orf91	Q5T1B1	145 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	MAPKAPK5-AS1	Q8N8E1	139 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	CYB561D1	Q8N8Q1	229 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	FAM167A-AS1	Q96KT0	104 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223	TMEM14C	Q9P0S9	112 aa		10.18	□□□□□ -0.78
IRF3-223	ENST00000599223		A0A0J9YY99	117 aa		10.17	□□□□□ -0.78
IRF3-223	ENST00000599223	FAM74A7	A6NL05	159 aa		10.17	□□□□□ -0.78
IRF3-223	ENST00000599223		C9JQL5	133 aa		10.17	□□□□□ -0.78
IRF3-223	ENST00000599223		H3BQ15	152 aa		10.17	□□□□□ -0.78
IRF3-223	ENST00000599223	ZNF493	Q6ZR52	646 aa		10.17	□□□□□ -0.78
IRF3-223	ENST00000599223	SLC50A1	Q9BRV3	221 aa		10.17	□□□□□ -0.78
IRF3-223	ENST00000599223	ZNF727	A8MUV8	499 aa		10.16	□□□□□ -0.78
IRF3-223	ENST00000599223		J3KRW8	73 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms