RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 LYPD6BQ8NI32 183 aa13.09□□□□□ -0.31
LIG1-216ENST00000598938 TVP23CQ96ET8 276 aa13.09□□□□□ -0.31
LIG1-216ENST00000598938 SGK494Q96LW2 274 aa13.09□□□□□ -0.31
LIG1-216ENST00000598938 PSG8Q9UQ74 426 aa13.09□□□□□ -0.31
LIG1-216ENST00000598938 C11orf94C9JXX5 98 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 F6UZH7 168 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 H7BYZ3 331 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 DEFB4AO15263 64 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 ZNF324O75467 553 aaPredicted RBP13.08□□□□□ -0.32
LIG1-216ENST00000598938 RNASE4P34096 147 aaKnown RBP13.08□□□□□ -0.32
LIG1-216ENST00000598938 FLI1Q01543 452 aaPredicted RBP13.08□□□□□ -0.32
LIG1-216ENST00000598938 IL17DQ8TAD2 202 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 LINC00479Q96M42 142 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 LINC01587Q99440 93 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 NIPSNAP3BQ9BS92 247 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 HYDINQ4G0P3 5121 aa13.08□□□□□ -0.32
LIG1-216ENST00000598938 ZNF705GA8MUZ8 300 aaPredicted RBP13.07□□□□□ -0.32
LIG1-216ENST00000598938 IFNA1P01562 189 aa13.07□□□□□ -0.32
LIG1-216ENST00000598938 TAS2R60P59551 318 aa13.07□□□□□ -0.32
LIG1-216ENST00000598938 RRN3P1Q2M238 152 aa13.07□□□□□ -0.32
LIG1-216ENST00000598938 TXNDC17Q9BRA2 123 aa13.07□□□□□ -0.32
LIG1-216ENST00000598938 KLF12Q9Y4X4 402 aa13.07□□□□□ -0.32
LIG1-216ENST00000598938 TRAV34A0A0B4J273 112 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 LOC102723971A0A1B0GUV8 181 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 PRM2P04554 102 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 PRNTQ86SH4 94 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 ZNF680Q8NEM1 530 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 NDFIP1Q9BT67 221 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 TREM1Q9NP99 234 aa13.06□□□□□ -0.32
LIG1-216ENST00000598938 SCO2A0A1W2PP80 73 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 TMEM189A5PLL7 270 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 BCL2P10415 239 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 Q6AWC8 147 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 Q86TA4 180 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 C2CD4CQ8TF44 421 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 FMC1Q96HJ9 113 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 PYGO2Q9BRQ0 406 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 LINC00467Q9BRT7 94 aa13.05□□□□□ -0.32
LIG1-216ENST00000598938 TRBV6-1A0A0K0K1D8 114 aa13.04□□□□□ -0.32
LIG1-216ENST00000598938 AZU1P20160 251 aa13.04□□□□□ -0.32
LIG1-216ENST00000598938 TAGLN2P37802 199 aaKnown RBP13.04□□□□□ -0.32
LIG1-216ENST00000598938 SAPCD1Q5SSQ6 148 aa13.04□□□□□ -0.32
LIG1-216ENST00000598938 Q6ZQT7 251 aa13.04□□□□□ -0.32
LIG1-216ENST00000598938 C11orf52Q96A22 123 aa13.04□□□□□ -0.32
LIG1-216ENST00000598938 AKR1C3P42330 323 aa13.03□□□□□ -0.32
LIG1-216ENST00000598938 UBE2G1P62253 170 aa13.03□□□□□ -0.32
LIG1-216ENST00000598938 MEF2BQ02080 365 aaPredicted RBP13.03□□□□□ -0.32
LIG1-216ENST00000598938 TMEM183BQ1AE95 376 aa13.03□□□□□ -0.32
LIG1-216ENST00000598938 C8orf49Q96NF6 230 aa13.03□□□□□ -0.32
LIG1-216ENST00000598938 VAX2Q9UIW0 290 aa13.03□□□□□ -0.32
LIG1-216ENST00000598938 PLAC8L1A1L4L8 177 aa13.02□□□□□ -0.33
LIG1-216ENST00000598938 HTN1P15515 57 aa13.02□□□□□ -0.33
LIG1-216ENST00000598938 ZNF493Q6ZR52 646 aa13.02□□□□□ -0.33
LIG1-216ENST00000598938 RNASE8Q8TDE3 154 aaKnown RBP13.02□□□□□ -0.33
LIG1-216ENST00000598938 TMEM263Q8WUH6 116 aaKnown RBP13.02□□□□□ -0.33
LIG1-216ENST00000598938 C16orf74Q96GX8 76 aa13.02□□□□□ -0.33
LIG1-216ENST00000598938 KRTAP17-1Q9BYP8 105 aa13.02□□□□□ -0.33
LIG1-216ENST00000598938 PDE6DO43924 150 aa13.01□□□□□ -0.33
LIG1-216ENST00000598938 S100A9P06702 114 aaKnown RBP13.01□□□□□ -0.33
LIG1-216ENST00000598938 ZNF80P51504 273 aaPredicted RBP13.01□□□□□ -0.33
LIG1-216ENST00000598938 SMUG1Q53HV7 270 aa13.01□□□□□ -0.33
LIG1-216ENST00000598938 EIF4E3Q8N5X7 224 aaKnown RBP13.01□□□□□ -0.33
LIG1-216ENST00000598938 CELA1Q9UNI1 258 aa13.01□□□□□ -0.33
LIG1-216ENST00000598938 ZFP30Q9Y2G7 519 aa13.01□□□□□ -0.33
LIG1-216ENST00000598938 IGHV1OR15-1A0A075B7D0 117 aa13□□□□□ -0.33
LIG1-216ENST00000598938 TRAV21A0A0B4J279 112 aa13□□□□□ -0.33
LIG1-216ENST00000598938 LTAP01374 205 aa13□□□□□ -0.33
LIG1-216ENST00000598938 EMP1P54849 157 aa13□□□□□ -0.33
LIG1-216ENST00000598938 ANXA2RQ3ZCQ2 193 aa13□□□□□ -0.33
LIG1-216ENST00000598938 COX8CQ7Z4L0 72 aa13□□□□□ -0.33
LIG1-216ENST00000598938 C11orf45Q8TAV5 145 aa13□□□□□ -0.33
LIG1-216ENST00000598938 CXorf65A6NEN9 183 aa12.99□□□□□ -0.33
LIG1-216ENST00000598938 RBFOX3A6NFN3 312 aa12.99□□□□□ -0.33
LIG1-216ENST00000598938 RGS13O14921 159 aa12.99□□□□□ -0.33
LIG1-216ENST00000598938 GCGP01275 180 aa12.99□□□□□ -0.33
LIG1-216ENST00000598938 PCNPQ8WW12 178 aaKnown RBP12.99□□□□□ -0.33
LIG1-216ENST00000598938 DKK2Q9UBU2 259 aa12.99□□□□□ -0.33
LIG1-216ENST00000598938 TEX48A0A1B0GUV7 120 aa12.98□□□□□ -0.33
LIG1-216ENST00000598938 CBY3A6NI87 242 aa12.98□□□□□ -0.33
LIG1-216ENST00000598938 SPART-AS1P0CW21 52 aa12.98□□□□□ -0.33
LIG1-216ENST00000598938 NANOS2P60321 138 aaKnown RBP12.98□□□□□ -0.33
LIG1-216ENST00000598938 TDRG1Q3Y452 100 aa12.98□□□□□ -0.33
LIG1-216ENST00000598938 ZNF506Q5JVG8 444 aa12.98□□□□□ -0.33
LIG1-216ENST00000598938 FAM222AQ5U5X8 452 aa12.98□□□□□ -0.33
LIG1-216ENST00000598938 PFN1P07737 140 aaKnown RBP12.97□□□□□ -0.33
LIG1-216ENST00000598938 RPL35P42766 123 aaKnown RBP12.97□□□□□ -0.33
LIG1-216ENST00000598938 MUC21Q5SSG8 566 aa12.97□□□□□ -0.33
LIG1-216ENST00000598938 C11orf72Q8NBR9 251 aa12.97□□□□□ -0.33
LIG1-216ENST00000598938 ZC2HC1AQ96GY0 325 aa12.97□□□□□ -0.33
LIG1-216ENST00000598938 FAM210AQ96ND0 272 aa12.97□□□□□ -0.33
LIG1-216ENST00000598938 DERL1Q9BUN8 251 aa12.97□□□□□ -0.33
LIG1-216ENST00000598938 TP53TG3Q9ULZ0 132 aa12.97□□□□□ -0.33
LIG1-216ENST00000598938 LYRM9A8MSI8 78 aa12.96□□□□□ -0.33
LIG1-216ENST00000598938 PLECQ15149 4684 aaKnown RBP12.96□□□□□ -0.33
LIG1-216ENST00000598938 IBA57Q5T440 356 aaKnown RBP12.96□□□□□ -0.33
LIG1-216ENST00000598938 FAM159AQ6UWV7 190 aa12.96□□□□□ -0.33
LIG1-216ENST00000598938 TMEM183AQ8IXX5 376 aa12.96□□□□□ -0.33
LIG1-216ENST00000598938 MLST8Q9BVC4 326 aa12.96□□□□□ -0.33
LIG1-216ENST00000598938 C11orf21Q9P2W6 132 aa12.96□□□□□ -0.33
LIG1-216ENST00000598938 TIMM8BQ9Y5J9 83 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms