RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FAM19A4Q96LR4 140 aa11.3□□□□□ -0.6
TRIM28-209ENST00000597423 C8orf49Q96NF6 230 aa11.3□□□□□ -0.6
TRIM28-209ENST00000597423 TRAV21A0A0B4J279 112 aa11.29□□□□□ -0.6
TRIM28-209ENST00000597423 A8MTW9 85 aa11.29□□□□□ -0.6
TRIM28-209ENST00000597423 H7BYZ3 331 aa11.29□□□□□ -0.6
TRIM28-209ENST00000597423 GATCO43716 136 aaKnown RBP11.29□□□□□ -0.6
TRIM28-209ENST00000597423 CDKN1BP46527 198 aa11.29□□□□□ -0.6
TRIM28-209ENST00000597423 RNF212Q495C1 297 aa11.29□□□□□ -0.6
TRIM28-209ENST00000597423 XKRY2A2RUG3 117 aa11.28□□□□□ -0.6
TRIM28-209ENST00000597423 ZNF705GA8MUZ8 300 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-209ENST00000597423 PFN1P07737 140 aaKnown RBP11.28□□□□□ -0.6
TRIM28-209ENST00000597423 RNASE4P34096 147 aaKnown RBP11.28□□□□□ -0.6
TRIM28-209ENST00000597423 OXLD1Q5BKU9 147 aa11.28□□□□□ -0.6
TRIM28-209ENST00000597423 NUDT10Q8NFP7 164 aa11.28□□□□□ -0.6
TRIM28-209ENST00000597423 NUDT11Q96G61 164 aa11.28□□□□□ -0.6
TRIM28-209ENST00000597423 RNASE7Q9H1E1 156 aaKnown RBP11.28□□□□□ -0.6
TRIM28-209ENST00000597423 SMCO4Q9NRQ5 59 aa11.28□□□□□ -0.6
TRIM28-209ENST00000597423 C19orf73Q9NVV2 129 aa11.28□□□□□ -0.6
TRIM28-209ENST00000597423 C19orf71A6NCJ1 209 aa11.27□□□□□ -0.61
TRIM28-209ENST00000597423 CXorf65A6NEN9 183 aa11.27□□□□□ -0.61
TRIM28-209ENST00000597423 RPS20P60866 119 aaKnown RBP11.27□□□□□ -0.61
TRIM28-209ENST00000597423 MORN3Q6PF18 240 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-209ENST00000597423 ZFAND2AQ8N6M9 145 aa11.27□□□□□ -0.61
TRIM28-209ENST00000597423 STAB1Q9NY15 2570 aa11.27□□□□□ -0.61
TRIM28-209ENST00000597423 C7orf71A4D174 169 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 A8MWL6 223 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 KLLNB2CW77 178 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 SH2D1AO60880 128 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 S100PP25815 95 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 EGFEM1PQ0D2K5 195 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 ZNF124Q15973 351 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 ATRAIDQ6UW56 229 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 AMTNQ6UX39 209 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 TRPT1Q86TN4 253 aaKnown RBP11.26□□□□□ -0.61
TRIM28-209ENST00000597423 IMMP2LQ96T52 175 aa11.26□□□□□ -0.61
TRIM28-209ENST00000597423 RPP21Q9H633 154 aaKnown RBP11.26□□□□□ -0.61
TRIM28-209ENST00000597423 TMEM189A5PLL7 270 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 J3KRW8 73 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 ORM1P02763 201 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 CRIP1P50238 77 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 SPINK13Q1W4C9 94 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 CT83Q5H943 113 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 Q6AWC8 147 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 KCNIP4Q6PIL6 250 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 DEFB125Q8N687 156 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 OR2D3Q8NGH3 330 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 C1QTNF4Q9BXJ3 329 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 TUBA4BQ9H853 241 aa11.25□□□□□ -0.61
TRIM28-209ENST00000597423 ZNF80P51504 273 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-209ENST00000597423 RPL19P84098 196 aaKnown RBP11.24□□□□□ -0.61
TRIM28-209ENST00000597423 LINC00322Q6ZN03 302 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-209ENST00000597423 C20orf144Q9BQM9 153 aa11.24□□□□□ -0.61
TRIM28-209ENST00000597423 M0R2Z0 102 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 Q8N1Y9 231 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 BTF3L4Q96K17 158 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 KCNS1Q96KK3 526 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 SRD5A3Q9H8P0 318 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 IL36BQ9NZH7 164 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 V9GYV3 84 aa11.23□□□□□ -0.61
TRIM28-209ENST00000597423 TRAV12-3A0A0B4J271 114 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 FAM231BA6NCW3 169 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 INSP01308 110 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 RPL35AP18077 110 aaKnown RBP11.22□□□□□ -0.61
TRIM28-209ENST00000597423 BTN1A1Q13410 526 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 SAMD5Q5TGI4 173 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 GFI1BQ5VTD9 330 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 FAM159AQ6UWV7 190 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 TSKUQ8WUA8 353 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 GFRA4Q9GZZ7 299 aa11.22□□□□□ -0.61
TRIM28-209ENST00000597423 SORL1Q92673 2214 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 TRAV12-2A0A075B6T6 113 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 LOC102724200A0A096LPH7 203 aaPredicted RBP11.21□□□□□ -0.61
TRIM28-209ENST00000597423 RBMY1BA6NDE4 496 aaKnown RBP11.21□□□□□ -0.61
TRIM28-209ENST00000597423 RBMY1EA6NEQ0 496 aaKnown RBP11.21□□□□□ -0.61
TRIM28-209ENST00000597423 RBMY1DP0C7P1 496 aaKnown RBP11.21□□□□□ -0.61
TRIM28-209ENST00000597423 FXYD7P58549 80 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 LINC01559Q495D7 138 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 TMEM256Q8N2U0 113 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 CSTL1Q9H114 145 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 WFDC10AQ9H1F0 79 aa11.21□□□□□ -0.61
TRIM28-209ENST00000597423 VWFP04275 2813 aa11.21□□□□□ -0.62
TRIM28-209ENST00000597423 NOTCH3Q9UM47 2321 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 KIR2DL5BA0A0G2JN68 375 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 KIR2DL5BA0A0G2JPC4 375 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 A0A1W2PPQ1 181 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 G3V4G9 280 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 ZNF324O75467 553 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-209ENST00000597423 CXCL1P09341 107 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 APOC4P55056 127 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 PRR9Q5T870 116 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 KIR2DL5AQ8N109 375 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 KIR2DL5BQ8NHK3 375 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 NAT8BQ9UHF3 227 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 NAGKQ9UJ70 344 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 GOLT1BQ9Y3E0 138 aa11.2□□□□□ -0.62
TRIM28-209ENST00000597423 TRAV9-1A0A075B6T8 112 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 SMIM27A0A1W2PRY6 76 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 KRTAP10-11P60412 298 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 TMEM88Q6PEY1 159 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 BORCS7Q96B45 105 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms