RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 C20orf144Q9BQM9 153 aa11.31□□□□□ -0.6
USHBP1-206ENST00000596436 YTHDF2Q9Y5A9 579 aaKnown RBP11.31□□□□□ -0.6
USHBP1-206ENST00000596436 C7orf71A4D174 169 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 MAP1LC3B2A6NCE7 125 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 TPT1P13693 172 aaKnown RBP11.3□□□□□ -0.6
USHBP1-206ENST00000596436 TAS2R60P59551 318 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 FAM74A1Q5RGS3 127 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 FAM222AQ5U5X8 452 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 Q6ZQT7 251 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 GOLT1AQ6ZVE7 132 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 CMTM2Q8TAZ6 248 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 TMED6Q8WW62 240 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 NDUFAF3Q9BU61 184 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 MAP1LC3BQ9GZQ8 125 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 DKK2Q9UBU2 259 aa11.3□□□□□ -0.6
USHBP1-206ENST00000596436 HSPG2P98160 4391 aa11.29□□□□□ -0.6
USHBP1-206ENST00000596436 MUC4Q99102 2169 aa11.29□□□□□ -0.6
USHBP1-206ENST00000596436 H7BYZ3 331 aa11.29□□□□□ -0.6
USHBP1-206ENST00000596436 C9orf62Q8N4C0 152 aa11.29□□□□□ -0.6
USHBP1-206ENST00000596436 TRAV8-1A0A0A6YYK1 113 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 ZNF324O75467 553 aaPredicted RBP11.28□□□□□ -0.6
USHBP1-206ENST00000596436 NMBP08949 121 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 SPART-AS1P0CW21 52 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 HTN1P15515 57 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 RNASE4P34096 147 aaKnown RBP11.28□□□□□ -0.6
USHBP1-206ENST00000596436 UBE2G2P60604 165 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 EIF5AP63241 154 aaKnown RBP11.28□□□□□ -0.6
USHBP1-206ENST00000596436 Q6ZR54 194 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 ARL6IP6Q8N6S5 226 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 C5orf17Q8NAS9 161 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 FAM213BQ8TBF2 198 aa11.28□□□□□ -0.6
USHBP1-206ENST00000596436 RNASE8Q8TDE3 154 aaKnown RBP11.28□□□□□ -0.6
USHBP1-206ENST00000596436 TRBV7-9A0A0J9YWB2 115 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 A0A1W2PRE2 83 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 UMAD1C9J7I0 102 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 TCRAP04437 139 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 GPX1P07203 203 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 SUMO1P63165 101 aaKnown RBP11.27□□□□□ -0.61
USHBP1-206ENST00000596436 TVP23CQ96ET8 276 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 FAM210BQ96KR6 192 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 SGK494Q96LW2 274 aa11.27□□□□□ -0.61
USHBP1-206ENST00000596436 ZFP69Q49AA0 526 aa11.26□□□□□ -0.61
USHBP1-206ENST00000596436 TMEM263Q8WUH6 116 aaKnown RBP11.26□□□□□ -0.61
USHBP1-206ENST00000596436 MBD3L1Q8WWY6 194 aa11.26□□□□□ -0.61
USHBP1-206ENST00000596436 C16orf74Q96GX8 76 aa11.26□□□□□ -0.61
USHBP1-206ENST00000596436 NIPSNAP3BQ9BS92 247 aa11.26□□□□□ -0.61
USHBP1-206ENST00000596436 A0A1B0GV50 99 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 FAM74A7A6NL05 159 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 M0R2N4 97 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 DPPA3Q6W0C5 159 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 PYGO2Q9BRQ0 406 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 EPDR1Q9UM22 224 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 LENEPQ9Y5L5 61 aa11.25□□□□□ -0.61
USHBP1-206ENST00000596436 TEX48A0A1B0GUV7 120 aa11.24□□□□□ -0.61
USHBP1-206ENST00000596436 IGLV2-11P01706 119 aa11.24□□□□□ -0.61
USHBP1-206ENST00000596436 SLC51BQ86UW2 128 aa11.24□□□□□ -0.61
USHBP1-206ENST00000596436 SFT2D1Q8WV19 159 aa11.24□□□□□ -0.61
USHBP1-206ENST00000596436 LINC00467Q9BRT7 94 aa11.24□□□□□ -0.61
USHBP1-206ENST00000596436 SERTM2A0A1B0GWG4 89 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 F6UZH7 168 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 NKX2-5P52952 324 aaPredicted RBP11.23□□□□□ -0.61
USHBP1-206ENST00000596436 ZNF493Q6ZR52 646 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 CYB561D1Q8N8Q1 229 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 ATG101Q9BSB4 218 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 KRTAP4-5Q9BYR2 181 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 TP53TG3Q9ULZ0 132 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 LRP1BQ9NZR2 4599 aa11.23□□□□□ -0.61
USHBP1-206ENST00000596436 LYRM9A8MSI8 78 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 RNF212Q495C1 297 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 Q6AWC8 147 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 CCDC28AQ8IWP9 274 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 C11orf72Q8NBR9 251 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 LINC00479Q96M42 142 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 NOP10Q9NPE3 64 aaKnown RBP11.22□□□□□ -0.61
USHBP1-206ENST00000596436 PSG8Q9UQ74 426 aa11.22□□□□□ -0.61
USHBP1-206ENST00000596436 NACAE9PAV3 2078 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 CBY3A6NI87 242 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 PEX7O00628 323 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 IFNA7P01567 189 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 H2AFB1P0C5Y9 115 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 ATP5G3P48201 142 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 SULT1A2P50226 295 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 DAD1P61803 113 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 MUC21Q5SSG8 566 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 EIF4E3Q8N5X7 224 aaKnown RBP11.21□□□□□ -0.61
USHBP1-206ENST00000596436 TMEM75Q8N9X5 138 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 C8orf49Q96NF6 230 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 TREM1Q9NP99 234 aa11.21□□□□□ -0.61
USHBP1-206ENST00000596436 TIMM8BQ9Y5J9 83 aaPredicted RBP11.21□□□□□ -0.61
USHBP1-206ENST00000596436 IGHV1OR15-1A0A075B7D0 117 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 TRAV34A0A0B4J273 112 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 K7EQM0 130 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 RGS13O14921 159 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 PAGE4O60829 102 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 DEFB130BP0DP73 79 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 DEFB130AP0DP74 79 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 CCL20P78556 96 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 FLI1Q01543 452 aaPredicted RBP11.2□□□□□ -0.62
USHBP1-206ENST00000596436 ANXA2RQ3ZCQ2 193 aa11.2□□□□□ -0.62
USHBP1-206ENST00000596436 EIF5AL1Q6IS14 154 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms