RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 NEGR1Q7Z3B1 354 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 FANCD2OSQ96PS1 177 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 PIMREGQ9BSJ6 248 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 C1orf43Q9BWL3 253 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 SPANXCQ9NY87 97 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 HEATR1Q9H583 2144 aaKnown RBP2.79□□□□□ -1.96
VMP1-216ENST00000592790 A0A1W2PRD5 423 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 A0A1W2PRF3 423 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 A0A1W2PRM7 423 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 M0R381 172 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 RRN3P1Q2M238 152 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 FAM120AOSQ5T036 256 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 GDF5OSQ5U4N7 250 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 DGAT2L7PQ6IED9 249 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 SMIM2Q9BVW6 85 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 LINC01619G3V211 115 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 FAM229AH3BQW9 127 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 DUSP14O95147 198 aaKnown RBP2.79□□□□□ -1.96
VMP1-216ENST00000592790 FRMD6-AS1P0C7T7 363 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 MED14OSP0DP75 135 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 SUMO2P61956 95 aaKnown RBP2.79□□□□□ -1.96
VMP1-216ENST00000592790 ATXN8Q156A1 80 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 ZNF672Q499Z4 452 aaPredicted RBP2.79□□□□□ -1.96
VMP1-216ENST00000592790 TCTEX1D4Q5JR98 221 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 VMO1Q7Z5L0 202 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 USMG5Q96IX5 58 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 C8orf49Q96NF6 230 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 ANAPC13Q9BS18 74 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 ERG28Q9UKR5 140 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 TRIOO75962 3097 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 TRBV25-1A0A075B6N4 114 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 TRAV40A0A0B4J280 105 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 CCL21O00585 134 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 IGKV1-17P01599 117 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 TRGV3P03979 118 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 PAX8Q06710 450 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 C15orf32Q32M92 178 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 C12orf74Q32Q52 190 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 LYPD2Q6UXB3 125 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 WFDC3Q8IUB2 231 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 ZNF418Q8TF45 676 aaPredicted RBP2.79□□□□□ -1.96
VMP1-216ENST00000592790 GTSF1LQ9H1H1 148 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 KLK15Q9H2R5 256 aa2.79□□□□□ -1.96
VMP1-216ENST00000592790 A0A0G2JNJ9 132 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 IGLL5B9A064 214 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 BRI3O95415 125 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 GAGE2BQ13066 116 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 GAGE2EQ4V326 116 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 CLEC19AQ6UXS0 136 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 LINC00173Q6ZV60 143 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 DTX2Q86UW9 622 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TM2D2Q9BX73 214 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 C7orf69Q9H7B7 122 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 GAGE2DQ9UEU5 116 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 Q9UFV3 132 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 MOB4Q9Y3A3 225 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TSSC4Q9Y5U2 329 aaPredicted RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 USF3Q68DE3 2245 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 PTPRQQ9UMZ3 2332 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TRGV11A0A075B6L2 103 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TEX22C9J3V5 150 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 H3BMG7 143 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 K7EIM0 57 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 IGLV1-47P01700 117 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 SPINK8P0C7L1 97 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 AZU1P20160 251 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 PMVKQ15126 192 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 ZNF56Q15929 161 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 RNF182Q8N6D2 247 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TPSG1Q9NRR2 321 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 FAM215AQ9Y5M1 114 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 ABCA12Q86UK0 2595 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 JMJD1CQ15652 2540 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 DIDO1Q9BTC0 2240 aaKnown RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 IGLV11-55A0A075B6I3 123 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TRAV8-2A0A0B4J237 113 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 TRBV7-9A0A0J9YWB2 115 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 SMKR1H3BMG3 65 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 H3BUA1 57 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 EGR2P11161 476 aaPredicted RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 WT1P19544 449 aaPredicted RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 HLA-DMBP28068 263 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 DUX4L9Q6RFH8 374 aaPredicted RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 MCRIP2Q9BUT9 160 aaKnown RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 C1QTNF4Q9BXJ3 329 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 MRPL35Q9NZE8 188 aaKnown RBP2.78□□□□□ -1.96
VMP1-216ENST00000592790 DKK2Q9UBU2 259 aa2.78□□□□□ -1.96
VMP1-216ENST00000592790 LOC400499M0QZD8 3231 aa2.78□□□□□ -1.97
VMP1-216ENST00000592790 ZNF407Q9C0G0 2248 aa2.78□□□□□ -1.97
VMP1-216ENST00000592790 ESPL1Q14674 2120 aa2.78□□□□□ -1.97
VMP1-216ENST00000592790 FRYQ5TBA9 3013 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 CHD7Q9P2D1 2997 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 TRAV8-4A0A0B4J246 113 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 E7EQL1 145 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 M0R2P5 195 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 CRYGBP07316 175 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 C2orf66Q6UXQ4 117 aa2.77□□□□□ -1.97
VMP1-216ENST00000592790 Q6ZVH6 145 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms