RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 KRTAP4-5Q9BYR2 181 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 SMIM3Q9BZL3 60 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 TRGV2A0A075B6R0 118 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 PGPA6NDG6 321 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 RTL8CO15255 209 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 CIDEAO60543 219 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 CXorf1O96002 111 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 STAG3L2P0CL84 134 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 STAG3L3P0CL85 134 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 CDC34P49427 236 aaPredicted RBP7.37□□□□□ -1.23
LIG3-212ENST00000590181 TDRG1Q3Y452 100 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 PHYHIPLQ96FC7 376 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 KCNS1Q96KK3 526 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 VGLL1Q99990 258 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 ARPC5LQ9BPX5 153 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 ACTR3CQ9C0K3 210 aaPredicted RBP7.37□□□□□ -1.23
LIG3-212ENST00000590181 WFDC1Q9HC57 220 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 PLA2G2EQ9NZK7 142 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 BOLA1Q9Y3E2 137 aa7.37□□□□□ -1.23
LIG3-212ENST00000590181 TRGV11A0A075B6L2 103 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 SPINK4O60575 86 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 CD300CQ08708 224 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 ZNF415Q09FC8 603 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 KIR3DS1Q14943 382 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 FAM159AQ6UWV7 190 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 Q6ZR54 194 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 IQCF2Q8IXL9 164 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 C5orf17Q8NAS9 161 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 C11orf72Q8NBR9 251 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 OR2T35Q8NGX2 323 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 NDFIP1Q9BT67 221 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 KLF12Q9Y4X4 402 aa7.36□□□□□ -1.23
LIG3-212ENST00000590181 IGKV2-40A0A087WW87 121 aaPredicted RBP7.35□□□□□ -1.23
LIG3-212ENST00000590181 A0A1W2PPQ1 181 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 A0A1W2PRE2 83 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 GAGE12BA1L429 117 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 J3KRW8 73 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 K7EP13 123 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 GAGE7O76087 117 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 NUDT3O95989 172 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 IGKV2D-40P01614 121 aaPredicted RBP7.35□□□□□ -1.23
LIG3-212ENST00000590181 PRM2P04554 102 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 GAGE12FP0CL80 117 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 GAGE12GP0CL81 117 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 GAGE12IP0CL82 117 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 ATP6V0CP27449 155 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 OR5I1Q13606 314 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 TTC32Q5I0X7 151 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 SAPCD1Q5SSQ6 148 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 ZNF575Q86XF7 245 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 RAB24Q969Q5 203 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 TCEAL7Q9BRU2 100 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 GSN-AS1Q9NRJ2 163 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 NACAE9PAV3 2078 aa7.35□□□□□ -1.23
LIG3-212ENST00000590181 TRAV21A0A0B4J279 112 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 M0R2N4 97 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 BTN1A1Q13410 526 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 C1orf134Q5TEV5 83 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 SH2D6Q7Z4S9 175 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 HSD17B11Q8NBQ5 300 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 RASL10AQ92737 203 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 HYLS1Q96M11 299 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 UPK3BQ9BT76 320 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 PRO0255Q9UI72 69 aa7.34□□□□□ -1.23
LIG3-212ENST00000590181 TRAV26-1A0A087WT03 109 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 FXYD6-FXYD2A0A087WZ82 144 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 TRGV1A0A0A0MS02 117 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 ARL14EPLP0DKL9 152 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 GCHFRP30047 84 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 RAB2AP61019 212 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 EIF5AP63241 154 aaKnown RBP7.33□□□□□ -1.24
LIG3-212ENST00000590181 ZNF345Q14585 488 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 ZFP69Q49AA0 526 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 Q6ZTI0 123 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 TREM1Q9NP99 234 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 HERC1Q15751 4861 aa7.33□□□□□ -1.24
LIG3-212ENST00000590181 CTXND1A0A1B0GTU2 59 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 HMSDA8MTL9 139 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 ORM1P02763 201 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 TCRAP04437 139 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 PPT1P50897 306 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 AKR1C8PQ5T2L2 129 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 GOLT1AQ6ZVE7 132 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 TMEM75Q8N9X5 138 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 ZNRF2Q8NHG8 242 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 STOML3Q8TAV4 291 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 HIST1H2BAQ96A08 127 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 PTH2Q96A98 100 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 TMPRSS5Q9H3S3 457 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 EPDR1Q9UM22 224 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 ARL2-SNX15V9GYD0 113 aa7.32□□□□□ -1.24
LIG3-212ENST00000590181 A0A0D9SG52 128 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 NBDYA0A0U1RRE5 68 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 RNF222A6NCQ9 220 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 UMAD1C9J7I0 102 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 F6UZH7 168 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 M0R2P5 195 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 FHITP49789 147 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 SUMO1P63165 101 aaKnown RBP7.31□□□□□ -1.24
LIG3-212ENST00000590181 MRPL23Q16540 153 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms