RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 FBLL1A6NHQ2 334 aaKnown RBP7.77□□□□□ -1.17
VPS4B-204ENST00000589604 NPIPB6E9PJ23 425 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 F6UB75 175 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 EGFEM1PQ0D2K5 195 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 SAMD13Q5VXD3 122 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 FAM231DQ6ZW35 169 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 OR10G8Q8NGN5 311 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 MCRIP2Q9BUT9 160 aaKnown RBP7.77□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF492Q9P255 531 aa7.77□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF256Q9Y2P7 627 aaPredicted RBP7.77□□□□□ -1.17
VPS4B-204ENST00000589604 CXorf65A6NEN9 183 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF688P0C7X2 276 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ID1P41134 155 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 GDF5OSQ5U4N7 250 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 NUDT10Q8NFP7 164 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 OR8A1Q8NGG7 326 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 NUDT11Q96G61 164 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 TRAV25A0A0B4J276 109 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 H7BYZ3 331 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 PPP1R2P9O14990 202 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 CT45A10P0DMU9 189 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF80P51504 273 aaPredicted RBP7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF138P52744 262 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ERVFC1-1P60608 527 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ELOBQ15370 118 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 CDPF1Q6NVV7 123 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF575Q86XF7 245 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 DYNLRB2Q8TF09 96 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 FAM19A4Q96LR4 140 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 C1orf43Q9BWL3 253 aa7.76□□□□□ -1.17
VPS4B-204ENST00000589604 INSL3P51460 131 aa7.75□□□□□ -1.17
VPS4B-204ENST00000589604 PAFAH1B2P68402 229 aa7.75□□□□□ -1.17
VPS4B-204ENST00000589604 PSMG4Q5JS54 123 aa7.75□□□□□ -1.17
VPS4B-204ENST00000589604 SAPCD1Q5SSQ6 148 aa7.75□□□□□ -1.17
VPS4B-204ENST00000589604 IBA57Q5T440 356 aaKnown RBP7.75□□□□□ -1.17
VPS4B-204ENST00000589604 PRR27Q6MZM9 219 aa7.75□□□□□ -1.17
VPS4B-204ENST00000589604 RBPMS2Q6ZRY4 209 aaKnown RBP7.75□□□□□ -1.17
VPS4B-204ENST00000589604 LINC00477Q96M19 166 aa7.75□□□□□ -1.17
VPS4B-204ENST00000589604 PRKDCP78527 4128 aaKnown RBP7.74□□□□□ -1.17
VPS4B-204ENST00000589604 A0A0J9YX75 114 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 CXCL1P09341 107 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 BTF3P20290 206 aaKnown RBP7.74□□□□□ -1.17
VPS4B-204ENST00000589604 SNRPD3P62318 126 aaKnown RBP7.74□□□□□ -1.17
VPS4B-204ENST00000589604 TMEM78Q5T7P6 136 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 C15orf54Q8N8G6 183 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 SPAG8Q99932 426 aaPredicted RBP7.74□□□□□ -1.17
VPS4B-204ENST00000589604 PYGO2Q9BRQ0 406 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 LENEPQ9Y5L5 61 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 URGCP-MRPS24S4R325 110 aa7.74□□□□□ -1.17
VPS4B-204ENST00000589604 A8MTW9 85 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 PRR9Q5T870 116 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 ZFAND2AQ8N6M9 145 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.73□□□□□ -1.17
VPS4B-204ENST00000589604 OR10J6PQ8NGY7 276 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 IMMP2LQ96T52 175 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 BIN3Q9NQY0 253 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 IL36BQ9NZH7 164 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 TGIF2-C20orf24A0A0A6YYL0 155 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 GATCO43716 136 aaKnown RBP7.73□□□□□ -1.17
VPS4B-204ENST00000589604 SH2D1AO60880 128 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 CA1P00915 261 aaPredicted RBP7.73□□□□□ -1.17
VPS4B-204ENST00000589604 FAM3BP58499 235 aaPredicted RBP7.73□□□□□ -1.17
VPS4B-204ENST00000589604 HIST1H1AQ02539 215 aaPredicted RBP7.73□□□□□ -1.17
VPS4B-204ENST00000589604 SMUG1Q53HV7 270 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 Q6ZQT7 251 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 APRG1Q8IVJ8 170 aa7.73□□□□□ -1.17
VPS4B-204ENST00000589604 SAV1Q9H4B6 383 aaPredicted RBP7.73□□□□□ -1.17
VPS4B-204ENST00000589604 TRBV24-1A0A075B6N3 115 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 SMIM27A0A1W2PRY6 76 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF705GA8MUZ8 300 aaPredicted RBP7.72□□□□□ -1.17
VPS4B-204ENST00000589604 CRISP2P16562 243 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 DEFB131AP59861 70 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 KIR3DS1Q14943 382 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 ZNF124Q15973 351 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 ODF3L2Q3SX64 289 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 AMTNQ6UX39 209 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 OR2K2Q8NGT1 345 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 RPP21Q9H633 154 aaKnown RBP7.72□□□□□ -1.17
VPS4B-204ENST00000589604 MAP6D1Q9H9H5 199 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 C11orf21Q9P2W6 132 aa7.72□□□□□ -1.17
VPS4B-204ENST00000589604 TRBV7-9A0A0J9YWB2 115 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 OR4C46A6NHA9 309 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 K7EIL1 84 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 DEFA6Q01524 100 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 FAM162BQ5T6X4 162 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 FOXI2Q6ZQN5 318 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 OR4B1Q8NGF8 309 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 NDFIP1Q9BT67 221 aa7.71□□□□□ -1.18
VPS4B-204ENST00000589604 KNCNA6PVL3 124 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 H3BMM0 161 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 P01737 135 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 CD7P09564 240 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 RPL19P84098 196 aaKnown RBP7.7□□□□□ -1.18
VPS4B-204ENST00000589604 TSKUQ8WUA8 353 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 ODF3Q96PU9 254 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 WFDC10AQ9H1F0 79 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 C19orf73Q9NVV2 129 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 COL7A1Q02388 2944 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 A0A087WWL8 130 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 RBMY1BA6NDE4 496 aaKnown RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms