RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 RBAKDNA6NC62 111 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 FBLL1A6NHQ2 334 aaKnown RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 KNCNA6PVL3 124 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 ZNF727A8MUV8 499 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 C9JQL5 133 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 DUSP14O95147 198 aaKnown RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 IGKV3-20P01619 116 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 S100A9P06702 114 aaKnown RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 SFTA3P0C7M3 94 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 RPL35P42766 123 aaKnown RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 ZNF138P52744 262 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 FLI1Q01543 452 aaPredicted RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 ERCC8Q13216 396 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 SOHLH1Q5JUK2 328 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 GDF5OSQ5U4N7 250 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 DGAT2L7PQ6IED9 249 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 STHQ8IWL8 128 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 SLC7A5P1Q8MH63 180 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 EIF4E3Q8N5X7 224 aaKnown RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 TMEM75Q8N9X5 138 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 Q8TAT8 98 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 C11orf52Q96A22 123 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 FMC1Q96HJ9 113 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 LINC00479Q96M42 142 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 PRR25Q96S07 402 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 VGLL1Q99990 258 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 SMIM7Q9BQ49 75 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 DERL1Q9BUN8 251 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 SAV1Q9H4B6 383 aaPredicted RBP3.93□□□□□ -1.78
LIG3-210ENST00000588109 PSG8Q9UQ74 426 aa3.93□□□□□ -1.78
LIG3-210ENST00000588109 TRRAPQ9Y4A5 3859 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 A0A087WWL8 130 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 A0A0J9YX75 114 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 F8W036 122 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 NDUFS6O75380 124 aaKnown RBP3.92□□□□□ -1.78
LIG3-210ENST00000588109 MGST1P10620 155 aaKnown RBP3.92□□□□□ -1.78
LIG3-210ENST00000588109 HLA-DRB4P13762 266 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 RPL35AP18077 110 aaKnown RBP3.92□□□□□ -1.78
LIG3-210ENST00000588109 LEPP41159 167 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 GNG4P50150 75 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 TAS2R60P59551 318 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 KRTAP10-11P60412 298 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 EGFEM1PQ0D2K5 195 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 TMEM183BQ1AE95 376 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 FAM74A3Q4VXF1 159 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 CENPWQ5EE01 88 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 SAPCD1Q5SSQ6 148 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 C9orf47Q6ZRZ4 202 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 Q86TA4 180 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 BAGE2Q86Y30 109 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 DEFB125Q8N687 156 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 NHLRC2Q8NBF2 726 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 C2CD4CQ8TF44 421 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 LINC00477Q96M19 166 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 ASCL2Q99929 193 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 FAM110AQ9BQ89 295 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 AGPAT4-IT1Q9H0P7 198 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 WFDC10AQ9H1F0 79 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 PARLQ9H300 379 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 TUBA4BQ9H853 241 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 SRD5A3Q9H8P0 318 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 KLF12Q9Y4X4 402 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 HLA-DRB4X5D2U9 266 aa3.92□□□□□ -1.78
LIG3-210ENST00000588109 TRBV6-1A0A0K0K1D8 114 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 TMEM218A2RU14 115 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 C9JCJ5 164 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 H3BMM0 161 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 LTAP01374 205 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 IGLV2-11P01706 119 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 GPX1P07203 203 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 CT45A10P0DMU9 189 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 TSPOP30536 169 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 FXYD7P58549 80 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 NUTF2P61970 127 aaKnown RBP3.91□□□□□ -1.78
LIG3-210ENST00000588109 SPINK13Q1W4C9 94 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 TMEM241Q24JQ0 296 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 PRR27Q6MZM9 219 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 NIPSNAP3BQ9BS92 247 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 ZNF492Q9P255 531 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 NAT8Q9UHE5 227 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 ZFP30Q9Y2G7 519 aa3.91□□□□□ -1.78
LIG3-210ENST00000588109 VWFP04275 2813 aa3.9□□□□□ -1.78
LIG3-210ENST00000588109 LOC102724200A0A096LPH7 203 aaPredicted RBP3.9□□□□□ -1.79
LIG3-210ENST00000588109 KRBOX1C9JBD0 128 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 M0R2Z0 102 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 RNASE4P34096 147 aaKnown RBP3.9□□□□□ -1.79
LIG3-210ENST00000588109 CDKN1BP46527 198 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 ADIRFQ15847 76 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 SMUG1Q53HV7 270 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 TRPT1Q86TN4 253 aaKnown RBP3.9□□□□□ -1.79
LIG3-210ENST00000588109 TMEM183AQ8IXX5 376 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 TVP23CQ96ET8 276 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 SMIM12Q96EX1 92 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 IGF2BP2-AS1Q96M15 143 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 ODF3Q96PU9 254 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 SEC11CQ9BY50 192 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 BIN3Q9NQY0 253 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 LENEPQ9Y5L5 61 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 CMYA5Q8N3K9 4069 aa3.9□□□□□ -1.79
LIG3-210ENST00000588109 NOTCH3Q9UM47 2321 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms