RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 IGHV3-66A0A0C4DH42 116 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 BUB3O43684 328 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 ECSCRQ19T08 205 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 TMEM78Q5T7P6 136 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 ZNF502Q8TBZ5 544 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 MYOZ3Q8TDC0 251 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 IGKV3D-20A0A0C4DH25 116 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 GOSR1O95249 250 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 HLA-DRB4P13762 266 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 CEND1Q8N111 149 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 ZFAND3Q9H8U3 227 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 HLA-DRB4X5D2U9 266 aa9.42□□□□□ -0.9
SHMT1-208ENST00000582352 IGLV2-18A0A075B6J9 118 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 TRAV40A0A0B4J280 105 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 RPL24P83731 157 aaKnown RBP9.41□□□□□ -0.9
SHMT1-208ENST00000582352 LAGE3Q14657 143 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 MINOS1Q5TGZ0 78 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 MRPL35Q9NZE8 188 aaKnown RBP9.41□□□□□ -0.9
SHMT1-208ENST00000582352 MINOS1-NBL1R4GNA1 71 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 CLEC3BP05452 202 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 EBI3Q14213 229 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 FAM110DQ8TAY7 271 aaPredicted RBP9.41□□□□□ -0.9
SHMT1-208ENST00000582352 TRAV26-2A0A0B4J265 109 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 SPANXN1Q5VSR9 72 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 TM2D2Q9BX73 214 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 AGPAT4-IT1Q9H0P7 198 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 C11orf21Q9P2W6 132 aa9.41□□□□□ -0.9
SHMT1-208ENST00000582352 IGHV3OR16-13A0A075B7E8 117 aa9.4□□□□□ -0.9
SHMT1-208ENST00000582352 IGHV3-74A0A0B4J1X5 117 aa9.4□□□□□ -0.9
SHMT1-208ENST00000582352 Q8N9W7 124 aa9.4□□□□□ -0.9
SHMT1-208ENST00000582352 TLN1Q9Y490 2541 aaKnown RBP9.4□□□□□ -0.9
SHMT1-208ENST00000582352 PLNP26678 52 aa9.4□□□□□ -0.91
SHMT1-208ENST00000582352 NRACQ8N912 160 aa9.4□□□□□ -0.91
SHMT1-208ENST00000582352 TMEM238C9JI98 176 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 C1orf122Q6ZSJ8 110 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 PHLDA1Q8WV24 401 aaPredicted RBP9.39□□□□□ -0.91
SHMT1-208ENST00000582352 MSRB2Q9Y3D2 182 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 IGHV7-4-1A0A0J9YVY3 117 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 SRSF1Q07955 248 aaKnown RBP eCLIP9.39□□□□□ -0.91
SHMT1-208ENST00000582352 FBXL19-AS1Q494R0 122 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 CLEC19AQ6UXS0 136 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 METTL26Q96S19 204 aa9.39□□□□□ -0.91
SHMT1-208ENST00000582352 A0A087WX48 190 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 TEX48A0A1B0GUV7 120 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 ATP6V0E1O15342 81 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 SPTBN2O15020 2390 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 ZFHX2Q9C0A1 2572 aaPredicted RBP9.38□□□□□ -0.91
SHMT1-208ENST00000582352 IGHV3-49A0A0A0MS15 119 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 CLPSL1A2RUU4 121 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 C8orf86Q6ZUL3 223 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 CCDC140Q96MF4 163 aa9.38□□□□□ -0.91
SHMT1-208ENST00000582352 PRSS47A8MTI9 375 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.37□□□□□ -0.91
SHMT1-208ENST00000582352 TAL2Q16559 108 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 MRPL53Q96EL3 112 aaKnown RBP9.37□□□□□ -0.91
SHMT1-208ENST00000582352 HIST1H4GQ99525 98 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 TRAV8-2A0A0B4J237 113 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 H3BVH4 76 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 K7EMI3 77 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 ZNF207O43670 478 aaKnown RBP9.37□□□□□ -0.91
SHMT1-208ENST00000582352 EFNA4P52798 201 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 EEF1AKMT3Q96AZ1 226 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 ZNF479Q96JC4 524 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 HIF1ANQ9NWT6 349 aa9.37□□□□□ -0.91
SHMT1-208ENST00000582352 MAPKAPK5-AS1Q8N8E1 139 aa9.36□□□□□ -0.91
SHMT1-208ENST00000582352 MRAP2Q96G30 205 aa9.36□□□□□ -0.91
SHMT1-208ENST00000582352 E9PLD3 99 aa9.36□□□□□ -0.91
SHMT1-208ENST00000582352 C9orf47Q6ZRZ4 202 aa9.36□□□□□ -0.91
SHMT1-208ENST00000582352 SMIM2Q9BVW6 85 aa9.36□□□□□ -0.91
SHMT1-208ENST00000582352 SPTA1P02549 2419 aa9.36□□□□□ -0.91
SHMT1-208ENST00000582352 IGHV4-4A0A075B6R2 117 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 IGLL5B9A064 214 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 CCL21O00585 134 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 ZFP36P26651 326 aaKnown RBP9.35□□□□□ -0.91
SHMT1-208ENST00000582352 F8VRH5 84 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 H7C1H1 209 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 C11orf71Q6IPW1 123 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 TRBV7-1A0A0A6YYK4 115 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 OR11H12B2RN74 326 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 G3V318 75 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 FOXI2Q6ZQN5 318 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 Q6ZQT7 251 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 OR11H1Q8NG94 326 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 OR11H2Q8NH07 326 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 C16orf92Q96LL3 132 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 SIRPDQ9H106 197 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 CACNA1BQ00975 2339 aa9.35□□□□□ -0.91
SHMT1-208ENST00000582352 TRAV12-1A0A0B4J245 112 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 F8W1H4 67 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 C12orf74Q32Q52 190 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 ORMDL2Q53FV1 153 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 KLK15Q9H2R5 256 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 J3QR89 54 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 KLK9Q2XQG4 91 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 KLK9Q9UKQ9 250 aa9.34□□□□□ -0.91
SHMT1-208ENST00000582352 AGRNO00468 2067 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 SAMD13Q5VXD3 122 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 SCGB3A1Q96QR1 104 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 CHTOPQ9Y3Y2 248 aaKnown RBP9.33□□□□□ -0.92
SHMT1-208ENST00000582352 HRNRQ86YZ3 2850 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms