RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 GZMBP10144 247 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 PAFAH1B2P68402 229 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 DEFB114Q30KQ6 69 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 PSMG4Q5JS54 123 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 RBPMS2Q6ZRY4 209 aaKnown RBP7.88□□□□□ -1.15
SS18-217ENST00000580958 NDUFA11Q86Y39 141 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 NUP35Q8NFH5 326 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 LINC00477Q96M19 166 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 NEU1Q99519 415 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 PPP1R14DQ9NXH3 145 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 NAT8BQ9UHF3 227 aa7.88□□□□□ -1.15
SS18-217ENST00000580958 TMSB15BA0A087X1C1 80 aa7.87□□□□□ -1.15
SS18-217ENST00000580958 TMEM189A5PLL7 270 aa7.87□□□□□ -1.15
SS18-217ENST00000580958 FRMD6-AS1P0C7T7 363 aa7.87□□□□□ -1.15
SS18-217ENST00000580958 SNRPD3P62318 126 aaKnown RBP7.87□□□□□ -1.15
SS18-217ENST00000580958 PRR9Q5T870 116 aa7.87□□□□□ -1.15
SS18-217ENST00000580958 MRPL54Q6P161 138 aaKnown RBP7.87□□□□□ -1.15
SS18-217ENST00000580958 TMEM61Q8N0U2 210 aa7.87□□□□□ -1.15
SS18-217ENST00000580958 GTSF1Q8WW33 167 aa7.87□□□□□ -1.15
SS18-217ENST00000580958 TEP1Q99973 2627 aaKnown RBP7.86□□□□□ -1.15
SS18-217ENST00000580958 JMJD1CQ15652 2540 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 TRAV2A0A0B4J234 112 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 FABP5P3A8MUU1 101 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 HIGD1CA8MV81 97 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 J3KRW8 73 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 CD300EQ496F6 205 aaPredicted RBP7.86□□□□□ -1.15
SS18-217ENST00000580958 ACTL10Q5JWF8 245 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 GDF5OSQ5U4N7 250 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 FRZBQ92765 325 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 PGLYRP4Q96LB8 373 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 LENEPQ9Y5L5 61 aa7.86□□□□□ -1.15
SS18-217ENST00000580958 A0A0J9YX75 114 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 LOC105371267A0A1B0GV96 52 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 PHOX2AO14813 284 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 FABP9Q0Z7S8 132 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 ZFAND2AQ8N6M9 145 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 FAM19A4Q96LR4 140 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 GFRA4Q9GZZ7 299 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 TRAPPC1Q9Y5R8 145 aa7.85□□□□□ -1.15
SS18-217ENST00000580958 TRAV25A0A0B4J276 109 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 FAM231BA6NCW3 169 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 SNURFLB1AK76 121 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 ORM1P02763 201 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 TRGC1P0CF51 173 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 RPS20P60866 119 aaKnown RBP7.84□□□□□ -1.15
SS18-217ENST00000580958 EBLN2Q6P2I7 272 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 WDR73Q6P4I2 378 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 SAV1Q9H4B6 383 aaPredicted RBP7.84□□□□□ -1.15
SS18-217ENST00000580958 SIGLEC8Q9NYZ4 499 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 C11orf21Q9P2W6 132 aa7.84□□□□□ -1.15
SS18-217ENST00000580958 CMYA5Q8N3K9 4069 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 TRBV7-9A0A0J9YWB2 115 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 XKRY2A2RUG3 117 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 GRIFINA4D1Z8 144 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 OR4C46A6NHA9 309 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 KNCNA6PVL3 124 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BKO60814 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 SAP30O75446 220 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 DUSP14O95147 198 aaKnown RBP7.83□□□□□ -1.16
SS18-217ENST00000580958 IGKV3-20P01619 116 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 PF4P02776 101 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BJP06899 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 GPX1P07203 203 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 CRISP2P16562 243 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BOP23527 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BBP33778 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 RNASE4P34096 147 aaKnown RBP7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BDP58876 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 DEFB131AP59861 70 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 RAB4BP61018 213 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BCP62807 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 KIR3DS1Q14943 382 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST2H2BEQ16778 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 COX19Q49B96 90 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.83□□□□□ -1.16
SS18-217ENST00000580958 FOXI2Q6ZQN5 318 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 Q6ZQT7 251 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 TMEM136Q6ZRR5 245 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 ATP5L2Q7Z4Y8 100 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 Q8N3U1 123 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BHQ93079 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BNQ99877 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 HIST1H2BMQ99879 126 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 SPAG8Q99932 426 aaPredicted RBP7.83□□□□□ -1.16
SS18-217ENST00000580958 GNB1LQ9BYB4 327 aa7.83□□□□□ -1.16
SS18-217ENST00000580958 MRPL18Q9H0U6 180 aaKnown RBP7.83□□□□□ -1.16
SS18-217ENST00000580958 NIPBLQ6KC79 2804 aaeCLIP7.82□□□□□ -1.16
SS18-217ENST00000580958 A0A1B0GXF2 115 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 S100A6P06703 90 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 LEPP41159 167 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 FOXA3P55318 350 aaPredicted RBP7.82□□□□□ -1.16
SS18-217ENST00000580958 ATRQ13535 2644 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 APRG1Q8IVJ8 170 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 LINC00482Q8N8I6 264 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 ODF3Q96PU9 254 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 TPPP3Q9BW30 176 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 MAP6D1Q9H9H5 199 aa7.82□□□□□ -1.16
SS18-217ENST00000580958 ZNF256Q9Y2P7 627 aaPredicted RBP7.82□□□□□ -1.16
SS18-217ENST00000580958 TRAV21A0A0B4J279 112 aa7.81□□□□□ -1.16
SS18-217ENST00000580958 IGKV3D-20A0A0C4DH25 116 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms