RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ZMAT4Q9H898 229 aa11.4□□□□□ -0.58
SS18-216ENST00000580751 COL7A1Q02388 2944 aa11.4□□□□□ -0.58
SS18-216ENST00000580751 AGRNO00468 2067 aa11.4□□□□□ -0.58
SS18-216ENST00000580751 IGKV2-40A0A087WW87 121 aaPredicted RBP11.39□□□□□ -0.59
SS18-216ENST00000580751 PRAC2D3DTV9 90 aa11.39□□□□□ -0.59
SS18-216ENST00000580751 IGKV2D-40P01614 121 aaPredicted RBP11.39□□□□□ -0.59
SS18-216ENST00000580751 RHEBQ15382 184 aa11.39□□□□□ -0.59
SS18-216ENST00000580751 OR4B1Q8NGF8 309 aa11.39□□□□□ -0.59
SS18-216ENST00000580751 AGPAT4-IT1Q9H0P7 198 aa11.39□□□□□ -0.59
SS18-216ENST00000580751 ZNF492Q9P255 531 aa11.39□□□□□ -0.59
SS18-216ENST00000580751 DNAH9Q9NYC9 4486 aa11.39□□□□□ -0.59
SS18-216ENST00000580751 TENM3Q9P273 2699 aa11.38□□□□□ -0.59
SS18-216ENST00000580751 TRAV34A0A0B4J273 112 aa11.38□□□□□ -0.59
SS18-216ENST00000580751 A8MTW9 85 aa11.38□□□□□ -0.59
SS18-216ENST00000580751 CA1P00915 261 aaPredicted RBP11.38□□□□□ -0.59
SS18-216ENST00000580751 RPL23P62829 140 aaKnown RBP11.38□□□□□ -0.59
SS18-216ENST00000580751 HIST1H1AQ02539 215 aaPredicted RBP11.38□□□□□ -0.59
SS18-216ENST00000580751 Q6ZWC4 215 aa11.38□□□□□ -0.59
SS18-216ENST00000580751 OCC1Q8TAD7 63 aa11.38□□□□□ -0.59
SS18-216ENST00000580751 VGLL1Q99990 258 aa11.38□□□□□ -0.59
SS18-216ENST00000580751 GCGP01275 180 aa11.37□□□□□ -0.59
SS18-216ENST00000580751 IGLV2-8P01709 118 aa11.37□□□□□ -0.59
SS18-216ENST00000580751 PRNTQ86SH4 94 aa11.37□□□□□ -0.59
SS18-216ENST00000580751 CLRN3Q8NCR9 226 aa11.37□□□□□ -0.59
SS18-216ENST00000580751 C1QTNF4Q9BXJ3 329 aa11.37□□□□□ -0.59
SS18-216ENST00000580751 A0A087WWC5 75 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 TRAV8-1A0A0A6YYK1 113 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 PPP1R2P9O14990 202 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 IGKV3-20P01619 116 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 CRISP2P16562 243 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 FAM19A4Q96LR4 140 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 TMEM242Q9NWH2 141 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 TP53TG1Q9Y2A0 90 aa11.36□□□□□ -0.59
SS18-216ENST00000580751 M0R036 132 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 MT-ND4LP03901 98 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 ZNF705DP0CH99 300 aaPredicted RBP11.35□□□□□ -0.59
SS18-216ENST00000580751 ZNF705BP0CI00 300 aaPredicted RBP11.35□□□□□ -0.59
SS18-216ENST00000580751 CT45A10P0DMU9 189 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 TSPOP30536 169 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 ADIRFQ15847 76 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 DEFB135Q30KP9 77 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 SMUG1Q53HV7 270 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 FAM231DQ6ZW35 169 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 ISOC2Q96AB3 205 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 CTDSP1Q9GZU7 261 aa11.35□□□□□ -0.59
SS18-216ENST00000580751 LEPP41159 167 aa11.34□□□□□ -0.59
SS18-216ENST00000580751 RNF183Q96D59 192 aa11.34□□□□□ -0.59
SS18-216ENST00000580751 ANAPC16Q96DE5 110 aa11.34□□□□□ -0.59
SS18-216ENST00000580751 RCHY1Q96PM5 261 aa11.34□□□□□ -0.59
SS18-216ENST00000580751 OSTCQ9NRP0 149 aa11.34□□□□□ -0.59
SS18-216ENST00000580751 K7EN84 100 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 SPRY2O43597 315 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 AMBPP02760 352 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 GIG44P09565 113 aaPredicted RBP11.33□□□□□ -0.6
SS18-216ENST00000580751 ERCC8Q13216 396 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 AMTNQ6UX39 209 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 C15orf54Q8N8G6 183 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 SFRP2Q96HF1 295 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 SGK494Q96LW2 274 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 RETNQ9HD89 108 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 U3KQK5 164 aa11.33□□□□□ -0.6
SS18-216ENST00000580751 C7orf77A4D0Y5 90 aa11.32□□□□□ -0.6
SS18-216ENST00000580751 PRB4P10163 310 aaPredicted RBP11.32□□□□□ -0.6
SS18-216ENST00000580751 MGST1P10620 155 aaKnown RBP11.32□□□□□ -0.6
SS18-216ENST00000580751 FAM162BQ5T6X4 162 aa11.32□□□□□ -0.6
SS18-216ENST00000580751 Q8TAT8 98 aa11.32□□□□□ -0.6
SS18-216ENST00000580751 OVOL2Q9BRP0 275 aa11.32□□□□□ -0.6
SS18-216ENST00000580751 XCL2Q9UBD3 114 aa11.32□□□□□ -0.6
SS18-216ENST00000580751 C19orf71A6NCJ1 209 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 CXorf65A6NEN9 183 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 PGPEP1LA6NFU8 196 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 FABP5P3A8MUU1 101 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 KLLNB2CW77 178 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 CT83Q5H943 113 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 DAZAP1Q96EP5 407 aaKnown RBP11.31□□□□□ -0.6
SS18-216ENST00000580751 ZC2HC1AQ96GY0 325 aa11.31□□□□□ -0.6
SS18-216ENST00000580751 PFN1P07737 140 aaKnown RBP11.3□□□□□ -0.6
SS18-216ENST00000580751 CDKN1BP46527 198 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 FXYD7P58549 80 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 ERVFC1-1P60608 527 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 SPINK13Q1W4C9 94 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 IBA57Q5T440 356 aaKnown RBP11.3□□□□□ -0.6
SS18-216ENST00000580751 ZFAND2AQ8N6M9 145 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 CSNK1G2-AS1Q8NCQ2 148 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 OR10G8Q8NGN5 311 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 IMMP2LQ96T52 175 aa11.3□□□□□ -0.6
SS18-216ENST00000580751 HUWE1Q7Z6Z7 4374 aaKnown RBP11.3□□□□□ -0.6
SS18-216ENST00000580751 TRAV21A0A0B4J279 112 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 M0R2Z0 102 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 INSP01308 110 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 GPX1P07203 203 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 RNF212Q495C1 297 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 Q6AWC8 147 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 C20orf144Q9BQM9 153 aa11.29□□□□□ -0.6
SS18-216ENST00000580751 FAM231BA6NCW3 169 aa11.28□□□□□ -0.6
SS18-216ENST00000580751 H7BYZ3 331 aa11.28□□□□□ -0.6
SS18-216ENST00000580751 P01737 135 aa11.28□□□□□ -0.6
SS18-216ENST00000580751 OR5I1Q13606 314 aa11.28□□□□□ -0.6
SS18-216ENST00000580751 NHLRC2Q8NBF2 726 aa11.28□□□□□ -0.6
SS18-216ENST00000580751 NUDT10Q8NFP7 164 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms