RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 EPDR1Q9UM22 224 aa13.69□□□□□ -0.22
SS18-208ENST00000577751 TRAV8-1A0A0A6YYK1 113 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 MAP1LC3B2A6NCE7 125 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 LY6G6CO95867 125 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 FHITP49789 147 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 Q6AWC8 147 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 LGALS9CQ6DKI2 356 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 EIF4E3Q8N5X7 224 aaKnown RBP13.68□□□□□ -0.22
SS18-208ENST00000577751 LINC00612Q8N6U2 182 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 STOML3Q8TAV4 291 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 TVP23CQ96ET8 276 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 MAP1LC3BQ9GZQ8 125 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 RYR2Q92736 4967 aa13.68□□□□□ -0.22
SS18-208ENST00000577751 hCG_2014768A0A024R1R8 64 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 DEFB130BP0DP73 79 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 DEFB130AP0DP74 79 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 TPT1P13693 172 aaKnown RBP13.67□□□□□ -0.22
SS18-208ENST00000577751 DAZ2Q13117 558 aaKnown RBP13.67□□□□□ -0.22
SS18-208ENST00000577751 AKAP14Q86UN6 197 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 C11orf72Q8NBR9 251 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 ZNF680Q8NEM1 530 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 FAM210BQ96KR6 192 aa13.67□□□□□ -0.22
SS18-208ENST00000577751 ALMS1Q8TCU4 4167 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 IGHV1OR15-1A0A075B7D0 117 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 CBY3A6NI87 242 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 FAM74A7A6NL05 159 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 SNURFLB1AK76 121 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 DPPA3Q6W0C5 159 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 MBD3L1Q8WWY6 194 aa13.66□□□□□ -0.22
SS18-208ENST00000577751 NKX6-2Q9C056 277 aaPredicted RBP13.66□□□□□ -0.22
SS18-208ENST00000577751 K7EQM0 130 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 RGS13O14921 159 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 IGLV2-11P01706 119 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 IBA57Q5T440 356 aaKnown RBP13.65□□□□□ -0.22
SS18-208ENST00000577751 SGK494Q96LW2 274 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 ATG101Q9BSB4 218 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 TREM1Q9NP99 234 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 TP53TG3Q9ULZ0 132 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 DNAH1Q9P2D7 4330 aa13.65□□□□□ -0.22
SS18-208ENST00000577751 HTN3P15516 51 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 UBE2G2P60604 165 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 CYB561D1Q8N8Q1 229 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 TMEM75Q8N9X5 138 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 FAM213BQ8TBF2 198 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 NDUFAF3Q9BU61 184 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 GSN-AS1Q9NRJ2 163 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 PSG8Q9UQ74 426 aa13.64□□□□□ -0.23
SS18-208ENST00000577751 FBLL1A6NHQ2 334 aaKnown RBP13.63□□□□□ -0.23
SS18-208ENST00000577751 TCL1AP56279 114 aa13.63□□□□□ -0.23
SS18-208ENST00000577751 SFT2D1Q8WV19 159 aa13.63□□□□□ -0.23
SS18-208ENST00000577751 ATP5G1P05496 136 aa13.62□□□□□ -0.23
SS18-208ENST00000577751 ATP5G3P48201 142 aa13.62□□□□□ -0.23
SS18-208ENST00000577751 FLI1Q01543 452 aaPredicted RBP13.62□□□□□ -0.23
SS18-208ENST00000577751 TDRG1Q3Y452 100 aa13.62□□□□□ -0.23
SS18-208ENST00000577751 KLF12Q9Y4X4 402 aa13.62□□□□□ -0.23
SS18-208ENST00000577751 ARL2-SNX15V9GYD0 113 aa13.62□□□□□ -0.23
SS18-208ENST00000577751 HYDINQ4G0P3 5121 aa13.62□□□□□ -0.23
SS18-208ENST00000577751 TRAV21A0A0B4J279 112 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 A0A1B0GVG6 124 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 F6UZH7 168 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 MUC21Q5SSG8 566 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 HIST1H2BAQ96A08 127 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 LINC00479Q96M42 142 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 NDFIP1Q9BT67 221 aa13.61□□□□□ -0.23
SS18-208ENST00000577751 GAGE12BA1L429 117 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 SPINK4O60575 86 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 GAGE7O76087 117 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 IFNA7P01567 189 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 GAGE12FP0CL80 117 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 GAGE12GP0CL81 117 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 GAGE12IP0CL82 117 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 EIF5AL1Q6IS14 154 aaKnown RBP13.6□□□□□ -0.23
SS18-208ENST00000577751 TMEM88Q6PEY1 159 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 FAM159AQ6UWV7 190 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 Q6ZTI0 123 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 SLC51BQ86UW2 128 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 C18orf15Q96N68 181 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 C8orf49Q96NF6 230 aa13.6□□□□□ -0.23
SS18-208ENST00000577751 PEX7O00628 323 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 H2AFB1P0C5Y9 115 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 RAB5CP51148 216 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 ZNF80P51504 273 aaPredicted RBP13.59□□□□□ -0.23
SS18-208ENST00000577751 SAPCD1Q5SSQ6 148 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 PRNTQ86SH4 94 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 C9orf62Q8N4C0 152 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 TCEAL7Q9BRU2 100 aa13.59□□□□□ -0.23
SS18-208ENST00000577751 TRAV34A0A0B4J273 112 aa13.58□□□□□ -0.24
SS18-208ENST00000577751 F5H768 121 aa13.58□□□□□ -0.24
SS18-208ENST00000577751 ZNF415Q09FC8 603 aa13.58□□□□□ -0.24
SS18-208ENST00000577751 LGALS9BQ3B8N2 356 aa13.58□□□□□ -0.24
SS18-208ENST00000577751 MDFICQ9P1T7 246 aa13.58□□□□□ -0.24
SS18-208ENST00000577751 PAGE4O60829 102 aa13.57□□□□□ -0.24
SS18-208ENST00000577751 SULT1A2P50226 295 aa13.57□□□□□ -0.24
SS18-208ENST00000577751 PPT1P50897 306 aa13.57□□□□□ -0.24
SS18-208ENST00000577751 SMUG1Q53HV7 270 aa13.57□□□□□ -0.24
SS18-208ENST00000577751 CST9LP1Q5W188 147 aa13.57□□□□□ -0.24
SS18-208ENST00000577751 TRGV11A0A075B6L2 103 aa13.56□□□□□ -0.24
SS18-208ENST00000577751 TRGV1A0A0A0MS02 117 aa13.56□□□□□ -0.24
SS18-208ENST00000577751 TRAV1-1A0A0B4J248 108 aa13.56□□□□□ -0.24
SS18-208ENST00000577751 A0A1B0GV50 99 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms