RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	NPIPB6	E9PJ23	425 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	HOXB4	P17483	251 aa	Predicted RBP	11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	PLP1	P60201	277 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	GAGE1	Q13065	139 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	PVRIG	Q6DKI7	326 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	ST20	Q9HBF5	79 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	C19orf84	I3L1E1	186 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001		Q6ZS46	218 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	ORAOV1	Q8WV07	137 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	TMEM158	Q8WZ71	300 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	AGPAT4-IT1	Q9H0P7	198 aa		11.45	□□□□□ -0.58
PRPF8-216	ENST00000577001	MGP	P08493	103 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	RPL7	P18124	248 aa	Known RBP	11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	PRTN3	P24158	256 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	MSRB2	Q9Y3D2	182 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	TMEM97	Q5BJF2	176 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	SPANXN1	Q5VSR9	72 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	JMJD8	Q96S16	334 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	TMEM14C	Q9P0S9	112 aa		11.44	□□□□□ -0.58
PRPF8-216	ENST00000577001	WI2-2373I1.2	A0A1W2PRP0	233 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	PET117	Q6UWS5	81 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001		Q8N9W7	124 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	CBY1	Q9Y3M2	126 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	PRRC2A	P48634	2157 aa	Known RBP	11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	GOSR1	O95249	250 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	C16orf92	Q96LL3	132 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	TRAV40	A0A0B4J280	105 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	UNQ9165/PRO28630	Q6UXU0	137 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	LINC00477	Q96M19	166 aa		11.43	□□□□□ -0.58
PRPF8-216	ENST00000577001	NIPBL	Q6KC79	2804 aa	eCLIP	11.42	□□□□□ -0.58
PRPF8-216	ENST00000577001	GAGE10	A6NGK3	116 aa		11.42	□□□□□ -0.58
PRPF8-216	ENST00000577001	RBX1	P62877	108 aa		11.42	□□□□□ -0.58
PRPF8-216	ENST00000577001	LINC01545	Q5VT33	79 aa		11.42	□□□□□ -0.58
PRPF8-216	ENST00000577001	CT83	Q5H943	113 aa		11.42	□□□□□ -0.58
PRPF8-216	ENST00000577001	GFRA4	Q9GZZ7	299 aa		11.42	□□□□□ -0.58
PRPF8-216	ENST00000577001	IGKV3D-20	A0A0C4DH25	116 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	GAGE12B	A1L429	117 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	TNFRSF6B	O95407	300 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	HBD	P02042	147 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	PRR9	Q5T870	116 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	DTX2	Q86UW9	622 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	DUX5	Q96PT3	197 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	SFTPC	P11686	197 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	TGFA	P01135	160 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	S100A4	P26447	101 aa	Known RBP	11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	RPL24	P83731	157 aa	Known RBP	11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	C14orf178	Q8N769	122 aa	Predicted RBP	11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	C8orf31	Q8N9H6	132 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	CST9L	Q9H4G1	147 aa		11.41	□□□□□ -0.58
PRPF8-216	ENST00000577001	IGHV2-70D	A0A0C4DH43	119 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	CCDC140	Q96MF4	163 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	FABP5P3	A8MUU1	101 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	COX8A	P10176	69 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	BLCAP	P62952	87 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	C12orf54	Q6X4T0	127 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	JPT2	Q9H910	190 aa		11.4	□□□□□ -0.58
PRPF8-216	ENST00000577001	ANKRD17	O75179	2603 aa	Known RBP	11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001		A1L4Q6	167 aa		11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	SMAD7	O15105	426 aa	Known RBP	11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	PF4V1	P10720	104 aa		11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	ARL3	P36405	182 aa		11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	HIST1H1A	Q02539	215 aa	Predicted RBP	11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	C10orf99	Q6UWK7	81 aa		11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	RPL39L	Q96EH5	51 aa	Known RBP	11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	NHP2	Q9NX24	153 aa	Known RBP	11.4	□□□□□ -0.59
PRPF8-216	ENST00000577001	GNRH2	O43555	120 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	RNASE4	P34096	147 aa	Known RBP	11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	OR11H6	Q8NGC7	330 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	TEX15	Q9BXT5	2789 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	TMEM78	Q5T7P6	136 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	AMTN	Q6UX39	209 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	DEFB125	Q8N687	156 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	MAP1LC3A	Q9H492	121 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	MXRA5	Q9NR99	2828 aa		11.39	□□□□□ -0.59
PRPF8-216	ENST00000577001	FXYD2	P54710	66 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	ZNF575	Q86XF7	245 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	ARL6IP6	Q8N6S5	226 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	LY6G5B	Q8NDX9	201 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	RNF185	Q96GF1	192 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	FN1	P02751	2386 aa	Known RBP	11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	IGSF10	Q6WRI0	2623 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	C20orf173	Q96LM9	149 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	MEGF9	Q9H1U4	602 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	TMEM8B	A6NDV4	472 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	C8orf86	Q6ZUL3	223 aa		11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	MRPL35	Q9NZE8	188 aa	Known RBP	11.38	□□□□□ -0.59
PRPF8-216	ENST00000577001	CRX	O43186	299 aa	Predicted RBP	11.37	□□□□□ -0.59
PRPF8-216	ENST00000577001	BUB3	O43684	328 aa		11.37	□□□□□ -0.59
PRPF8-216	ENST00000577001	PRM2	P04554	102 aa		11.37	□□□□□ -0.59
PRPF8-216	ENST00000577001	GNLY	P22749	145 aa		11.37	□□□□□ -0.59
PRPF8-216	ENST00000577001	SAPCD1	Q5SSQ6	148 aa		11.37	□□□□□ -0.59
PRPF8-216	ENST00000577001	FAM74A4	Q5TZK3	123 aa		11.37	□□□□□ -0.59
PRPF8-216	ENST00000577001	IGHV4-38-2	P0DP08	117 aa		11.36	□□□□□ -0.59
PRPF8-216	ENST00000577001	TRAV30	A0A087WSZ9	112 aa		11.36	□□□□□ -0.59
PRPF8-216	ENST00000577001	TTC9C	Q8N5M4	171 aa		11.36	□□□□□ -0.59
PRPF8-216	ENST00000577001	NPB	Q8NG41	125 aa		11.36	□□□□□ -0.59
PRPF8-216	ENST00000577001		A0A087WWL8	130 aa		11.36	□□□□□ -0.59
PRPF8-216	ENST00000577001	ODF3B	A8MYP8	253 aa		11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms